Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N02
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   0.64 
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    27   0.85 
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   2.6  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   4.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   4.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.5  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    24   6.0  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    24   7.9  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   7.9  

>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 199 LLVSAMYRYLPSLLAESPDGSLNSAGSAVSII 104
           L++   +R+LP +    PDGS    G  + II
Sbjct: 154 LMIEHKFRHLPVVSDGGPDGSAGDEGDVIGII 185


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 135 NEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSL 293
           N  SGLSAS +  Y++ + ++++T ++ ++       + +  AE   S+ D L
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTISRAEKTGSQWDKL 408


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 225 AKNVCQDFKVRLAEPKFSEPDSLIIYKNDLFVTRKCGSLII 347
           A      F  + A  K+ E  S I+Y N+ F  R  GSL I
Sbjct: 148 ANETALKFARKAAFEKYGEGKSQIVYFNNSFHGRSLGSLSI 188


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 310 SFLYMIKLSGSENFG-SARRTLKSWQTFFARLRIFTVWLLVSAM 182
           S L+M+ L+GSEN G S     ++ +T      + T+  +++A+
Sbjct: 321 SKLHMVDLAGSENIGRSGAENKRARETGMINQSLLTLGRVINAL 364


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 99  PTMIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN-LAKNVCQDFK 251
           P+++E + P  + E S L+ SSDG +L IA  N   V+I N   KN   D+K
Sbjct: 192 PSIMELS-PTTY-EVSSLAYSSDGGFLAIARVNGF-VEIWNRKTKNNRCDYK 240


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 302  VYDQAVRL*ELRFRETYFKVLADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRFVK 132
            VYD +       F+++YF  + D L +++ F  +  SI Y   + +   + S  + K
Sbjct: 1130 VYDISFGSLTFYFQKSYFNAIYDFLLKLKRFQELFSSIRYAIYYKLYGNKVSLTYPK 1186


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 153 SASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYK-ND 311
           +   DGK+++I  +     ++L L + + +++ V L  P F   +    Y+ ND
Sbjct: 244 TVKEDGKFVHIEKSMGWKKELLGLVQTLYKEYWVLLLFPMFFSSNWFTTYQFND 297


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 180 YIADTNNHTVKILNLAKNV 236
           Y+ADT  H   ILNL + +
Sbjct: 143 YLADTLRHNQNILNLCERI 161


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 260 ETYFKVLADVLRQVENFH 207
           +  +  +AD+LRQ E+FH
Sbjct: 8   DAVYNKVADILRQCEDFH 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,218
Number of Sequences: 5004
Number of extensions: 22317
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)