Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_N02
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 40 4e-04
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 28 1.8
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865... 28 1.8
04_04_0482 - 25547393-25547455,25547767-25547866,25548154-255482... 28 2.4
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 27 3.1
01_06_0759 + 31754616-31754647,31754862-31755077,31755186-317553... 27 3.1
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 4.1
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199... 27 4.1
07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729... 27 4.1
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523... 27 4.1
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 27 5.5
09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957... 26 7.2
07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534... 26 7.2
07_01_0305 - 2181727-2184793,2185635-2185945 26 9.6
06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503 26 9.6
02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255... 26 9.6
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 114 TADPAEFNEPSGLSASSDGKYLYIADTNNHTVKIL 218
T D A FN P GL+ +S LY+ADT NH ++ L
Sbjct: 620 TFDTASFNRPQGLAYNSKKNILYVADTENHALRTL 654
Score = 33.1 bits (72), Expect = 0.063
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 126 AEFNEPSGLSASSDGKYLYIADTNNHTVKILNL 224
A+ +EP+GL DG+ L +ADTNN T++ + L
Sbjct: 861 AQLSEPAGLVEVGDGR-LLVADTNNSTIRYIVL 892
Score = 31.9 bits (69), Expect = 0.15
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 11 SNRTLYLADTYNHKIKKVD 67
S+ +Y+AD+YNHKIK++D
Sbjct: 818 SDNQIYVADSYNHKIKRLD 836
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 114 TADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
T P G+ +SD + +Y+AD+ NH +K L+
Sbjct: 802 TGSDVLLQHPLGVVYASDNQ-IYVADSYNHKIKRLD 836
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 141 PSGLSASSDGKYLYIADTNNHTVKIL 218
P+GL+ S+DG YL +A+T T KIL
Sbjct: 215 PNGLAMSNDGSYLLLAETT--TGKIL 238
>03_02_0842 + 11682332-11683802,11683858-11683940,11684751-11686553,
11687783-11688633,11689230-11689299,11689597-11689641
Length = 1440
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 117 ADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSE 281
+DP + + GL YIADT ++ L++ V D + +L PK+ E
Sbjct: 1249 SDPTKLVQ--GLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKWYE 1301
>04_04_0482 -
25547393-25547455,25547767-25547866,25548154-25548203,
25548883-25548969,25549343-25549429,25549510-25550009,
25550061-25550134,25550548-25551632
Length = 681
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 203 HRENSQPGEERLPRL*STSRGTEVLRAGQLDH 298
H +N+QP R ST+RG VLR+ H
Sbjct: 564 HEDNAQPTSRTARRFQSTTRGPRVLRSTVPQH 595
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 105 MIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
+++T D +E GL+ +DG LY+ + TV+IL+
Sbjct: 762 LLQTIDSYISDERVGLAEPADGIELYLCPSQGKTVEILS 800
>01_06_0759 +
31754616-31754647,31754862-31755077,31755186-31755341,
31755446-31755503,31755618-31755935,31756026-31756265,
31756345-31756443,31756529-31756561,31756670-31756867
Length = 449
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 241 WQTFFARLRIFTVWL--LVSAMYRYLPS 164
W+TF L +++ W+ L A RYLPS
Sbjct: 13 WETFLIILVVYSAWICPLEFAFLRYLPS 40
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 141 PSGLSASSDGKYLYIADTNNHTVKIL 218
P+GL+ S DG YL +A+T T KIL
Sbjct: 215 PNGLAMSIDGSYLLLAETT--TGKIL 238
>08_01_0239 -
1993833-1994114,1994266-1994436,1994541-1994686,
1995127-1995182,1995314-1995437,1995527-1995712,
1995787-1995845,1996413-1996630,1996853-1996966,
1997339-1997466,1997591-1997650,1998225-1998386,
1998796-1998883
Length = 597
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 23 LYLADTYNHKIKKVDIGPQKCHVTEP 100
LY+ D+ NH ++K D+G + P
Sbjct: 178 LYIVDSENHAVRKADLGRRMLETVYP 203
>07_03_1540 -
27570605-27571375,27571474-27572748,27572769-27572921,
27572923-27573159
Length = 811
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 117 ADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKF 275
+DP + + GL YIADT ++ L++ V D + +L PK+
Sbjct: 685 SDPTKLVQ--GLRKDERAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKW 735
>02_05_1168 +
34651143-34651424,34651983-34652138,34652239-34652346,
34652778-34652888,34652985-34654421,34654598-34654852
Length = 782
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 108 IETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPD 287
+E AD + N SG + +YI + H +K L L N C +L E F E
Sbjct: 629 LEAADENKENNASGQDGLLE---VYIKWESGHLIKGLKLLSNSCLSDLRKLLEDHFEEAG 685
Query: 288 S 290
S
Sbjct: 686 S 686
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 292 KLSGSENFGSARRTLKSWQTFFARLRIFTVWLLVSAMYRYLPSLLAES 149
K SGS G + LK+WQ A + ++ V+ L Y + SL A S
Sbjct: 269 KESGSGRMGHTKSLLKNWQLMSA-ITLYCVFSLHDTAYLEIFSLWAVS 315
>09_02_0461 +
9577003-9577065,9577471-9577568,9578339-9578394,
9578446-9578672,9578956-9579045
Length = 177
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 207 VKILNLAKNVCQDFKVRLAEPKFSEPDSLIIY 302
V IL L ++CQ F + + K+ EP +IY
Sbjct: 11 VSILRLF-SMCQHFVITVTRTKYKEPTKALIY 41
>07_03_0431 -
18152041-18152085,18152368-18152685,18152927-18153482,
18153886-18154577,18155234-18155614,18156159-18156241,
18156618-18156786,18157498-18157543,18158301-18158389,
18158476-18158591,18159137-18159443
Length = 933
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 111 ETADPAEFNEPSGLSASSDGKYLYIADTNN 200
E + P E N G+SASS G ++ NN
Sbjct: 225 ELSLPEEINSHGGISASSGGSFVSSQQINN 254
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 304 LYMIKLSGSENFGSARRTLKSWQTFFARLRIFT 206
+YM +L+G+ + GSARR L+ T AR RI T
Sbjct: 85 VYMQRLAGAGSGGSARRLLR-LLTLPARRRIAT 116
>06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503
Length = 206
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 93 LNPTMIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKI 215
+ +I T E N SGL A+ + L + D N H +K+
Sbjct: 92 MRENIIVTGCVREVNVQSGLPATRSTERLELLDDNEHILKV 132
>02_05_0582 +
30124280-30124487,30124600-30124698,30125438-30125589,
30125708-30125896,30126001-30126111,30126370-30126536,
30127923-30128184
Length = 395
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 274 NFGSARRTLKSWQTFFARLRIFTVWLLVSAMYRYLPSLLAESPDGSLNSAGSAVS-IIVG 98
+FG A T+ + F + W++ SA+ + L S L +S + + +A SA+S +++G
Sbjct: 261 SFGVAVATVTDLEFNFFGAVVALAWIVPSAVNKILWSNLQQSGNWTALAATSALSHVVLG 320
Query: 97 -FSDVTLLRS 71
F + ++ S
Sbjct: 321 QFKTIVIMLS 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,238,617
Number of Sequences: 37544
Number of extensions: 140201
Number of successful extensions: 397
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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