Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N02
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    39   9e-04
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    39   9e-04
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    30   0.54 
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    30   0.54 
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    30   0.54 
Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    27   2.9  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    27   2.9  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    27   3.8  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    27   5.0  
AF039710-8|AAB96686.2|  312|Caenorhabditis elegans Hypothetical ...    27   5.0  
U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    26   6.6  
U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    26   8.7  

>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 129 EFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKN 308
           +F EPSG++ +  G  + +ADTNNH +++ +        FK +  E    + D  ++Y N
Sbjct: 585 QFTEPSGVAVNGQGD-IVVADTNNHRIQVFDKEGR----FKFQFGE--CGKRDGQLLYPN 637

Query: 309 DLFVTRKCGSLII 347
            + V R  G  ++
Sbjct: 638 RVAVNRTTGDFVV 650


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +3

Query: 129 EFNEPSGLSASSDGKYLYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKN 308
           +F EPSG++ +  G  + +ADTNNH +++ +        FK +  E    + D  ++Y N
Sbjct: 585 QFTEPSGVAVNGQGD-IVVADTNNHRIQVFDKEGR----FKFQFGE--CGKRDGQLLYPN 637

Query: 309 DLFVTRKCGSLII 347
            + V R  G  ++
Sbjct: 638 RVAVNRTTGDFVV 650


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 126 AEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
           A+FN P G++    G  +Y+AD +NH V++ +
Sbjct: 803 AKFNNPWGVAVDDLGS-IYVADKDNHRVQVFD 833



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 123 PAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
           P + N P  ++ S    ++Y++D++NH + + +
Sbjct: 849 PGQLNSPLFIAVSRVTHHVYVSDSSNHRISVFD 881


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 126 AEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
           A+FN P G++    G  +Y+AD +NH V++ +
Sbjct: 803 AKFNNPWGVAVDDLGS-IYVADKDNHRVQVFD 833



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 123 PAEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
           P + N P  ++ S    ++Y++D++NH + + +
Sbjct: 849 PGQLNSPLFIAVSRVTHHVYVSDSSNHRISVFD 881


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 207  VKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKNDLFV 320
            + IL+L+KN+  DF   + EPK+ +   L     D F+
Sbjct: 1236 MSILDLSKNLMYDFHYNVMEPKYGDGLKLCYQDTDSFI 1273


>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 322 VTNRSFLYMIKLSGSENFGSARRTLKSWQTFFARLRIFTVWLLVSA-MYRY 173
           + N  FLY+I    S  +G+ R  L  + TF      FTV++ V    YRY
Sbjct: 20  LVNPIFLYLIFTEKSNRYGNYRFLLLFFATFNVCYSCFTVFVPVDVHTYRY 70


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 SGLSASSDGKYLYIADTNNH 203
           + LS SSDGK+L+ AD   H
Sbjct: 326 TALSKSSDGKFLFSADAEGH 345


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 242 LADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRF 138
           +AD+L +   F+ ++I IGY+ +  + A    GRF
Sbjct: 607 IADMLEEFSQFNYIIIVIGYI-LMVIYAAFTQGRF 640


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 242 LADVLRQVENFHGVVISIGYV*VFAVAAGRKSGRF 138
           +AD+L +   F+ ++I IGY+ +  + A    GRF
Sbjct: 607 IADMLEEFSQFNYIIIVIGYI-LMVIYAAFTQGRF 640


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +3

Query: 135 NEPSGLSASSDGKYLYIADTNNHTVKILNLA 227
           N+ + ++ SSDGK+L +AD N+  +++ ++A
Sbjct: 557 NKVNAMTFSSDGKWLLVAD-NDSYIRVFDVA 586


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 107 HRRVQ*RDTFAVRYRPSLFYDCTCPLNRAFYWI 9
           + R++ +   ++  RP++ Y  T PLN   +W+
Sbjct: 432 YTRIEEQGLHSIWLRPAVTYSSTSPLNVKLFWL 464


>AF039710-8|AAB96686.2|  312|Caenorhabditis elegans Hypothetical
           protein C46E10.1 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 126 AEFNEPSGLSASSDGKYLYIADTNNHTVKILN 221
           AE NE        DG ++Y  D N H + +++
Sbjct: 29  AEENEERKKICGGDGAWVYYGDNNEHVIDLIS 60


>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 322 VTNRSFLYMIKLSGSENFGSARRTLKSWQTFFARLRIFTVWLLVSAMYRYLPSLL 158
           +TN + +Y+I     +NFGS +  +  +  F     I  + L   AM+ YL S +
Sbjct: 20  ITNVTLIYLIITRTRQNFGSYKYLMLWFAAFSLWYSIIDI-LTQPAMHSYLNSFI 73


>U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical
           protein C25G6.3 protein.
          Length = 532

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 TNNHTVKILNLAKNVCQDFKVRLAEPKF 275
           T + T K+L LAK  C+ FK  +   KF
Sbjct: 494 TGSSTEKVLKLAKGECRHFKNSIFMKKF 521


>AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical
           protein Y19D10B.2 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 SGLSASSDGKYLYIADTNNHTVK--ILNLAKNVCQDFKV 254
           +GL A   G+Y  + D NN  ++  + NL    C +F++
Sbjct: 349 AGLEAVECGQYSIVLDFNNQMIEFGLTNLTSISCSNFEI 387


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 87   TSLNPTMIETADPAEFNEPSGLSASSDGKYLYIADTNNHTVKILNL 224
            +SLN T  ++    E + P G++     + +Y AD+ N  + + +L
Sbjct: 1344 SSLNGTEHKSYFNKELSSPEGIAVDWSSRNVYYADSMNDEIGVASL 1389


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 EFNEPSGLSASSDGKYLYIADTNNHTVKI 215
           E + PSG   S D   + IADTNNH V +
Sbjct: 750 ELHCPSGFCLS-DTDDILIADTNNHRVVV 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,154,357
Number of Sequences: 27780
Number of extensions: 124316
Number of successful extensions: 466
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)