Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_N02
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 165 DGKYLYIADTNNHTVKILNLAKN 233
           D  Y YI+D + + + + + AKN
Sbjct: 185 DNTYAYISDLSGYALVVYSWAKN 207


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 304  LYMIKLSGSENFGSARRTLKSWQTFF 227
            LY   + G E     +RTL +  T+F
Sbjct: 1249 LYTRVVDGREELNHGKRTLPAKNTYF 1274


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 304  LYMIKLSGSENFGSARRTLKSWQTFF 227
            LY   + G E     +RTL +  T+F
Sbjct: 1245 LYTRVVDGREELNHGKRTLPAKNTYF 1270


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 177 LYIADTNNHTVKILNLAKNVCQDFKVRLAEPKFSEPDSLIIYKNDLF 317
           LY   +N        +  N C  +  + +EP+ S   SL+ Y   +F
Sbjct: 347 LYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSSLLRYPRSIF 393


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 195 NNHTVKILNLAKNVCQDFKVRLAEPKFSE 281
           NN  ++ L     V  DF   L + KF +
Sbjct: 807 NNQGLECLRFLNEVISDFDAILDQNKFKD 835


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 269 RFRETYFKVLADVLRQVENFHGVVISIGY 183
           ++ E YF  +A V  ++ N   +++ IG+
Sbjct: 231 QWEEVYFLNMASVFMRIFNLICMMLLIGH 259


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 STSRGTEVLRAGQLDHIQERSVR 319
           S  +  E+L + +LD + +R++R
Sbjct: 283 SDRQRNEILLSDELDSVDDRTLR 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,832
Number of Sequences: 438
Number of extensions: 1557
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)