Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M24
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0006 + 16257288-16259522                                         32   0.43 
07_03_1188 + 24671022-24672482                                         29   4.0  
11_06_0064 + 19733643-19734056                                         28   7.0  
08_02_1435 + 27079184-27082006                                         28   7.0  
08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942     27   9.2  
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701...    27   9.2  

>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 617 NVCILEEAAVGRNTVGTYERPSSGIGFDIHCNW 519
           N+ ++E+AAVG        R +SG   D HC+W
Sbjct: 525 NLYVMEDAAVGEFGTSKVTRLTSGAWTDTHCSW 557


>07_03_1188 + 24671022-24672482
          Length = 486

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 129 FLIHRTEYRRINSVKTQAFT--DQASHRAATEVLRALTSKDSLHKVDT 266
           F +H ++ R  N++  +A      A+ RAA E+ R L  + SLH  D+
Sbjct: 69  FSLHFSDVRPTNALLAEALALAPPATSRAAAELFRFLVRRRSLHPSDS 116


>11_06_0064 + 19733643-19734056
          Length = 137

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 66  RYLQLFWLQ-LAVMLVSVTSTRFLIHRTEYRRINSVKTQAFTDQASHRAATEVLR 227
           R LQ+++L+ LA  L    S   L HR  +R   +V + + T  +SH AA+ V R
Sbjct: 82  RPLQVYYLRRLAHTLRLAPSPAALAHRRVWRHNTAVSSPSPTRASSHSAASFVRR 136


>08_02_1435 + 27079184-27082006
          Length = 940

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 48  TKCTHFRYLQLFWLQLAVMLVSVTSTRFLIHRTEYRRINSVKTQA 182
           +K T  RYL L WL LA  +  + +   ++H  E  R+N     A
Sbjct: 167 SKLTSLRYLDLSWLYLAASVDWLQAVN-MLHLLEVLRLNDASLPA 210


>08_02_1166 - 24835622-24835707,24835811-24835916,24836616-24836942
          Length = 172

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 626 VRNNVCILEEAAVGRNTVGTYERPSSGIGFDIHCNWEISCLQKKTTSKLD 477
           V  N+ +L  A + R+ V    +P+   GFD+   W +    KK    LD
Sbjct: 107 VSKNMFLLLHAMMLRHHVSFVLKPTENEGFDLGVKWSLEWKGKKLPWDLD 156


>01_07_0344 -
           42869465-42869502,42869597-42869771,42869923-42870117,
           42870678-42870788,42870899-42871111,42871551-42871658,
           42871732-42871873,42872150-42873449,42874032-42874085,
           42874491-42874923
          Length = 922

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 398 VLNSDTKGHYYYPSSVNIGYGSSNLASPIYSSFSSGDSLSPNYNEYQNQY 547
           +L S  +  YY    V +GY  ++L SPI  S   G      + +   +Y
Sbjct: 492 LLQSQKQYSYYGNLGVGLGYAGNSLTSPILPSSPGGPGSPLRHGDRSMRY 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,240
Number of Sequences: 37544
Number of extensions: 270672
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)