Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M23
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 210 9e-56
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 206 3e-54
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 32 0.074
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.8
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 4.9
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 8.5
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 8.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 8.5
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 8.5
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 210 bits (514), Expect = 9e-56
Identities = 106/190 (55%), Positives = 124/190 (65%)
Frame = +3
Query: 33 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
MSKVS + V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
M +CILGD D AK V M SE LIKQIP
Sbjct: 61 NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120
Query: 393 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 572
RLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++LA
Sbjct: 121 RLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAA 180
Query: 573 NVHLSINFLV 602
N+ L+INFLV
Sbjct: 181 NLSLAINFLV 190
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 206 bits (502), Expect = 3e-54
Identities = 103/190 (54%), Positives = 125/190 (65%)
Frame = +3
Query: 33 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
MSKVS ++ V +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 1 MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60
Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
M +CILGD D AK V M SE LIKQIP
Sbjct: 61 NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120
Query: 393 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 572
RLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L
Sbjct: 121 RLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIA 180
Query: 573 NVHLSINFLV 602
N+ L++NFLV
Sbjct: 181 NIMLAVNFLV 190
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 31.9 bits (69), Expect = 0.074
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 369 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 536
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 537 GHVDMTPDELAQNVHLSINFL 599
GHV T ELA+NV + F+
Sbjct: 204 GHVSNTSTELAENVESILQFV 224
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 48 RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 176
++ L++ V SKE ++ T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 506 EEGVVPVCGRRSRRHDSR*TCPKCAPFN 589
E V +C ++ R +S CP C P +
Sbjct: 95 ESNVCSMCSKQERTFESEAFCPSCYPLD 122
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 66 CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 182
C N +++SS K F +TV + +YD P+ D + G
Sbjct: 939 CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 515 HLLHLEFDGSLDFINFLC 462
HL DG LDFIN +C
Sbjct: 609 HLASEGLDGELDFINVIC 626
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 72 NAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 218
+A IQ + E+K FL ++ + N D KD+ KY+ P++
Sbjct: 170 DAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRV 218
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 562 SSGVMST*PTATDRHNTFFIWNLMVPLTSSIFC 464
S+G + T T+R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 136 ICSSTVSKNLRFFSFEDWMTAL 71
IC S + L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 366 SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 539
S+ ++ R++G K F +++ S +DE++ + K + ++LC VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792
Query: 540 HVD 548
H+D
Sbjct: 1793 HID 1795
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 62 IERITRYFRHFYEPTTLH 9
I++IT F HF+ P LH
Sbjct: 216 IDKITSLFIHFFPPLVLH 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,634
Number of Sequences: 5004
Number of extensions: 38477
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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