Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M23
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 204 6e-53
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 202 1e-52
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 202 2e-52
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 200 7e-52
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 42 3e-04
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 29 2.1
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 28 5.0
02_05_1180 + 34776151-34776480,34776578-34776760,34776849-347771... 28 5.0
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 8.7
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 8.7
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 27 8.7
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 8.7
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 204 bits (497), Expect = 6e-53
Identities = 98/190 (51%), Positives = 129/190 (67%)
Frame = +3
Query: 33 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
MSK+ + L E ++ V+ KEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
KM+VC+LGD QH +EA+++ + M SE++IKQIP
Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 393 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 572
RLLGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ Q
Sbjct: 121 RLLGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 175
Query: 573 NVHLSINFLV 602
N+ +S+NFLV
Sbjct: 176 NIQMSVNFLV 185
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 202 bits (494), Expect = 1e-52
Identities = 97/190 (51%), Positives = 130/190 (68%)
Frame = +3
Query: 33 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
K++VC+LGD QH +EA+++ + M SE++IKQIP
Sbjct: 61 KLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 393 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 572
RLLGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ Q
Sbjct: 121 RLLGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQ 175
Query: 573 NVHLSINFLV 602
NV +S+NFLV
Sbjct: 176 NVQMSVNFLV 185
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 202 bits (492), Expect = 2e-52
Identities = 97/191 (50%), Positives = 130/191 (68%)
Frame = +3
Query: 30 KMSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 209
++ K+ + L E ++ V+ SKEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPR
Sbjct: 18 QLHKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 77
Query: 210 PKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQI 389
PKM+VC+LGD QH +EA+++ + M SE++IKQI
Sbjct: 78 PKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 137
Query: 390 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELA 569
PRLLGP GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++
Sbjct: 138 PRLLGP-----GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQ 192
Query: 570 QNVHLSINFLV 602
QN+ +S+NFLV
Sbjct: 193 QNIQMSVNFLV 203
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 200 bits (488), Expect = 7e-52
Identities = 103/212 (48%), Positives = 135/212 (63%), Gaps = 22/212 (10%)
Frame = +3
Query: 33 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
KM+VC+LGD QH +EA+++ + M SE++IKQIP
Sbjct: 61 KMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 393 RLLGPGLNKA----------------------GKFPGLLSHQESMTQKIDEVKGTIKFQM 506
RLLGPGLNKA GKFP L++HQES+ K++E K T+KFQ+
Sbjct: 121 RLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQL 180
Query: 507 KKVLCLSVAVGHVDMTPDELAQNVHLSINFLV 602
KKVLC+ VAVG+ M ++ QNV +S+NFLV
Sbjct: 181 KKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLV 212
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 42.3 bits (95), Expect = 3e-04
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
Frame = +3
Query: 87 SSKEKKRKFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAK 263
S+ EKKR F ETVE + L DP++ D+ G + L + ++V + + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
Query: 264 QLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGP-GLNKAGKFPGL 440
+ L K + R+LGP GL K G
Sbjct: 338 AAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSK-VARILGPRGLMPNPKL-GS 395
Query: 441 LSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV 602
+++ S K + G + F++ K + V +G ++ + + L +N+ ++ L+
Sbjct: 396 VTNDVSGAVKAAK-SGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFVHALL 448
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 372 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 548
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 549 MTPDELAQNVHLSINFLV 602
M ++ +NV ++ V
Sbjct: 205 MKEEDTVENVMAAVEAAV 222
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 191 LDGAGETLVLLRVIVLETD 135
LDGAGE LVLLR +L+ D
Sbjct: 65 LDGAGERLVLLRADLLDPD 83
>02_05_1180 +
34776151-34776480,34776578-34776760,34776849-34777198,
34777430-34777631
Length = 354
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 236 TENAHLHLRTRDVLKLDGAGETLVLLRVIVLETD 135
T+NAHL L LDGAGE L L R VL+++
Sbjct: 61 TKNAHL-------LALDGAGERLTLCRADVLDSE 87
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 389 SASPWSWSQ*GWQVPWSLIP 448
SA WSW GW VP + P
Sbjct: 273 SAFAWSWGPLGWLVPSEIFP 292
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 378 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 497
++ + +LG N K+ LL + + KIDE++ ++K
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 389 SASPWSWSQ*GWQVPWSLIP 448
SA WSW GW VP + P
Sbjct: 397 SAFAWSWGPLGWLVPSEIFP 416
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 389 SASPWSWSQ*GWQVPWSLIP 448
SA WSW GW VP + P
Sbjct: 399 SAFAWSWGPLGWLVPSEIFP 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,583
Number of Sequences: 37544
Number of extensions: 259714
Number of successful extensions: 625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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