Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M23
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   238   3e-63
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   193   9e-50
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   147   5e-36
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   7.8  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  238 bits (582), Expect = 3e-63
 Identities = 112/190 (58%), Positives = 136/190 (71%)
 Frame = +3

Query: 33  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 212
           MSKVSR++L E +  V++ S EK RKF ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 1   MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRP 60

Query: 213 KMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 392
            M+VC+ GDQ H DEA   D+P M                           SESLIKQIP
Sbjct: 61  NMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIP 120

Query: 393 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 572
           R+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  
Sbjct: 121 RILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVS 180

Query: 573 NVHLSINFLV 602
           N+ LSINFLV
Sbjct: 181 NISLSINFLV 190


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  193 bits (470), Expect = 9e-50
 Identities = 89/153 (58%), Positives = 107/153 (69%)
 Frame = +3

Query: 144 KNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXX 323
           KNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA   D+P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 324 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 503
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 504 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLV 602
           MKKVLCLSVAVGHV +T +EL  N+ LSINFLV
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLV 160


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  147 bits (357), Expect = 5e-36
 Identities = 70/129 (54%), Positives = 84/129 (65%)
 Frame = +3

Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
           M+VC+ GDQ H DEA   D+P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 575
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 576 VHLSINFLV 602
           + LSINFLV
Sbjct: 121 ISLSINFLV 129


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 145 LRPICSSTVSKNLRFFSFEDWMTALTHS 62
           L PI + T  +  +FF+FE +  A THS
Sbjct: 65  LPPILAETPKRATKFFTFEQYKIAFTHS 92


>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 123 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQH 248
           ++L++G   YDP          ++KY P+ KM + ILG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 497
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,947
Number of Sequences: 27780
Number of extensions: 225274
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)