Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M21
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   4.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   9.8  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 203 IILTARHSF*NEQYSLLQYKASRRGVSLIHRVHIHKTDTLSFLLKTLLWY 54
           ++ TA   F  ++YSL  YK   R  SL   +H+ K   +   L T + Y
Sbjct: 358 LLRTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFK-KIVRITLSTFISY 406


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 435 KNTREYKSIVSTSLHSSLALKPL 367
           + T EY  I  TS HSS +LK L
Sbjct: 299 QGTHEYSIINLTSNHSSFSLKAL 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,472
Number of Sequences: 5004
Number of extensions: 34293
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)