Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M21
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           28   4.2  
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409...    27   5.6  

>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 158 LLQYKASRRGVSLIHRVHIHKTDTLSFLL 72
           L+QYK    G SL+  + +   D+LSFLL
Sbjct: 595 LVQYKVDFAGSSLLENLALQGDDSLSFLL 623


>08_02_1002 +
           23439642-23440046,23440558-23440761,23440874-23440990,
           23441116-23441511,23441586-23441938,23442067-23442187,
           23442602-23442781,23442813-23442896,23444398-23444523,
           23445286-23445588
          Length = 762

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 44  SISDTTTVFLKETITCQFCVCELYGLRKRHVW 139
           SI  +T       ITC  C+C      KR +W
Sbjct: 555 SIHPSTFTSFSRFITCSICICNSRAKDKRVIW 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,595,919
Number of Sequences: 37544
Number of extensions: 177730
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)