Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M21
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   8.6  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 95  FCVCELYGLRKRHVW-MLYTAIKNTVRSRR 181
           + +C+  GLR+ H+W      + NTV S+R
Sbjct: 403 YFICDALGLRRPHIWEYARLNMTNTVMSKR 432


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -1

Query: 423 EYKSIVSTSLHSSLALKPL*RYINTYFFVS*FTANIIPFRTFNTLHKITDMSTLPVY 253
           E   ++ +  H + A KP   Y N Y      TAN++P    N LH  T  + L  Y
Sbjct: 330 ELDRVIGSERHINTADKPNLPYTNAYINEIQRTANLVP---LNLLHMTTRDTVLKGY 383


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 172 TNSILYCSIKHPDVAFP*SIEFTYTKLTRYRFF*KHC 62
           T+ +LY  IKHP++     IEF Y +  +YR+F   C
Sbjct: 74  TDCLLYLIIKHPNL-----IEFLY-RYPKYRYFSVWC 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,895
Number of Sequences: 27780
Number of extensions: 184127
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)