Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M20
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    28   0.95 
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   1.7  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   2.2  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   2.2  

>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +1

Query: 160 RLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIVENSSTDKAVIGLSI 339
           +L AAK    V V  ++   AG +    +     G G   R TLI +  ST    I    
Sbjct: 87  QLMAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMSTSPLCITSDT 146

Query: 340 LFHVHTLNYKVSNPYIEVPLISPGG 414
            F    L   + + +  +P++S GG
Sbjct: 147 RFD-DALLLMIEHKFRHLPVVSDGG 170


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 139 QHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRV 285
           +H+LN+LR F  + LLDV  K +     G  +  +L      L P F+V
Sbjct: 7   EHQLNKLRDFLDEILLDVSQKYQKKFHPGGYQ--KLEELAFDLEPYFQV 53


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 166 IIATGLTRAGTSRASL*YTVIDRFQYADLNPFRYETS 56
           +I++ +TR G  R+      +D ++Y D +P R  TS
Sbjct: 197 VISSNITRQGIKRSRTLPWAVDPYRYGDPDPKRTSTS 233


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 283 VTLIVENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLI-SPGGKLKFPTKIEEIF 450
           V  I ENS       G+ +L ++ T++YKVS  Y+E  L+ +      FPT++  ++
Sbjct: 611 VIFIDENSEASTISKGV-VLKYLETISYKVSIIYLEKLLLDNKFNDTVFPTRLALLY 666


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 146 SCWNVTCISVIHRHRPVS 93
           S W +T  ++IHRH+P+S
Sbjct: 126 SAWPITIRNLIHRHQPLS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,594
Number of Sequences: 5004
Number of extensions: 53652
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)