Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M20
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951...    30   1.7  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    28   6.9  
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    28   6.9  
06_03_0098 - 16621473-16621511,16621617-16621655,16621741-166220...    27   9.1  
05_01_0106 + 702504-702687,702856-703037,703070-703933                 27   9.1  

>08_02_1160 -
           24793708-24794796,24794888-24794951,24795028-24795146,
           24795496-24795612,24796365-24796406,24797342-24797506,
           24797806-24797898,24798190-24798291,24798360-24798501,
           24799301-24799651,24799741-24799839,24800019-24800230,
           24800394-24800429
          Length = 876

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 415 KLKFPTKIEEIFDDNINPDVIFRPVTGQGGERTLVKVLLLKEGRPTPI 558
           KL+ PT+    F DN  P V  +P    G  + +VK+ LL++  P P+
Sbjct: 123 KLRTPTRDHIKFPDN--PAVTRKPFDVNGMNKKVVKIRLLEDCPPAPL 168


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 169 AAKTLLDVHVKSENSMAAGAMEPIRLTAEVE 261
           A ++LL++H++S  + +  A EPI+ T EV+
Sbjct: 101 AIRSLLNLHLESVQNNSGVAFEPIQETTEVQ 131


>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 480 PSGDRAGRGAYSSQSPPFERR*ADTDIGGDSSNAPNRSTYVA 605
           P+  R GR    S+ PP   R    D GGD      R   V+
Sbjct: 100 PAASRGGRRGRDSRGPPPRSRFGGGDFGGDRRGFERRGRMVS 141


>06_03_0098 -
           16621473-16621511,16621617-16621655,16621741-16622029,
           16622112-16622282,16622361-16623244,16623332-16623775,
           16623854-16624561
          Length = 857

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 569 VAANIGVGLPSFKRRTLTRVRSPPCPVTGRK 477
           + A   VGLP+  R+TL+R RS  C V GR+
Sbjct: 27  ITAVDAVGLPTSPRKTLSRFRS-ICGVIGRQ 56


>05_01_0106 + 702504-702687,702856-703037,703070-703933
          Length = 409

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 603 QHKWIGWGHLNCRRQYRCRPTFFQKEDFD 517
           +HKWI W  +N   ++ C    F+    D
Sbjct: 67  EHKWISWRDINETLEFECLQDLFKTVGID 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,388
Number of Sequences: 37544
Number of extensions: 389295
Number of successful extensions: 1048
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)