Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M20
         (621 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109064-1|AAI09065.1|  593|Homo sapiens Bardet-Biedl syndrome 1...    93   5e-19
AK027645-1|BAB55261.1|  630|Homo sapiens protein ( Homo sapiens ...    93   5e-19
AF503941-1|AAM92770.1|  593|Homo sapiens Bardet-Biedl syndrome 1...    93   5e-19
BC109065-1|AAI09066.1|  446|Homo sapiens BBS1 protein protein.         82   2e-15
BC047642-1|AAH47642.1|  463|Homo sapiens BBS1 protein protein.         82   2e-15

>BC109064-1|AAI09065.1|  593|Homo sapiens Bardet-Biedl syndrome 1
           protein.
          Length = 593

 Score = 93.5 bits (222), Expect = 5e-19
 Identities = 57/160 (35%), Positives = 92/160 (57%)
 Frame = +1

Query: 118 TEMHVTFQHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIV 297
           T MH  FQ +L  LRL AA+  L     S + ++  A EP++L A V+GLGP F++TL +
Sbjct: 446 TAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHL 505

Query: 298 ENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVI 477
           +N+ST + V+GL + F  +   Y +   + +VPL+ PG  L +P    E F ++++    
Sbjct: 506 QNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPG--LNYPL---ETFVESLS---- 556

Query: 478 FRPVTGQGGERTLVKVLLLKEGRPTPILAATVQMPPTDPL 597
                   G   ++KVL+L+EG+  P+L+A V MP ++ L
Sbjct: 557 ------NKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGL 590


>AK027645-1|BAB55261.1|  630|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14739 fis, clone NT2RP3002402. ).
          Length = 630

 Score = 93.5 bits (222), Expect = 5e-19
 Identities = 57/160 (35%), Positives = 92/160 (57%)
 Frame = +1

Query: 118 TEMHVTFQHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIV 297
           T MH  FQ +L  LRL AA+  L     S + ++  A EP++L A V+GLGP F++TL +
Sbjct: 483 TAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHL 542

Query: 298 ENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVI 477
           +N+ST + V+GL + F  +   Y +   + +VPL+ PG  L +P    E F ++++    
Sbjct: 543 QNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPG--LNYPL---ETFVESLS---- 593

Query: 478 FRPVTGQGGERTLVKVLLLKEGRPTPILAATVQMPPTDPL 597
                   G   ++KVL+L+EG+  P+L+A V MP ++ L
Sbjct: 594 ------NKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGL 627


>AF503941-1|AAM92770.1|  593|Homo sapiens Bardet-Biedl syndrome 1
           protein.
          Length = 593

 Score = 93.5 bits (222), Expect = 5e-19
 Identities = 57/160 (35%), Positives = 92/160 (57%)
 Frame = +1

Query: 118 TEMHVTFQHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIV 297
           T MH  FQ +L  LRL AA+  L     S + ++  A EP++L A V+GLGP F++TL +
Sbjct: 446 TAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHL 505

Query: 298 ENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVI 477
           +N+ST + V+GL + F  +   Y +   + +VPL+ PG  L +P    E F ++++    
Sbjct: 506 QNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPG--LNYPL---ETFVESLS---- 556

Query: 478 FRPVTGQGGERTLVKVLLLKEGRPTPILAATVQMPPTDPL 597
                   G   ++KVL+L+EG+  P+L+A V MP ++ L
Sbjct: 557 ------NKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGL 590


>BC109065-1|AAI09066.1|  446|Homo sapiens BBS1 protein protein.
          Length = 446

 Score = 81.8 bits (193), Expect = 2e-15
 Identities = 44/120 (36%), Positives = 70/120 (58%)
 Frame = +1

Query: 118 TEMHVTFQHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIV 297
           T MH  FQ +L  LRL AA+  L     S + ++  A EP++L A V+GLGP F++TL +
Sbjct: 317 TAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHL 376

Query: 298 ENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVI 477
           +N+ST + V+GL + F  +   Y +   + +VPL+ PG      T +E + +  I+ D+I
Sbjct: 377 QNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPGLNYPLETFVESLSNKGIS-DII 435


>BC047642-1|AAH47642.1|  463|Homo sapiens BBS1 protein protein.
          Length = 463

 Score = 81.8 bits (193), Expect = 2e-15
 Identities = 44/120 (36%), Positives = 70/120 (58%)
 Frame = +1

Query: 118 TEMHVTFQHELNRLRLFAAKTLLDVHVKSENSMAAGAMEPIRLTAEVEGLGPVFRVTLIV 297
           T MH  FQ +L  LRL AA+  L     S + ++  A EP++L A V+GLGP F++TL +
Sbjct: 334 TAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKLTLHL 393

Query: 298 ENSSTDKAVIGLSILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVI 477
           +N+ST + V+GL + F  +   Y +   + +VPL+ PG      T +E + +  I+ D+I
Sbjct: 394 QNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLLVPGLNYPLETFVESLSNKGIS-DII 452


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,792,464
Number of Sequences: 237096
Number of extensions: 2031012
Number of successful extensions: 4168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4165
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)