Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M20
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.60 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +1

Query: 334 SILFHVHTLNYKVSNPYIEVPLISPGGKLKFPTKIEEIFDDNINPDVIFRPVTGQGGERT 513
           +I+F  H      S+ ++ V    P  + K   +++EIF D+  P      +  +  ER 
Sbjct: 344 TIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLERC 403

Query: 514 LVKVLLLKEGRPTPILAATVQ 576
           L++ L +    P P++A  ++
Sbjct: 404 LLETLRMYP--PVPLIAREIK 422


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 508 APRPARSPDGK*HPGLYYHRISPRFLWGTLTYRPARLEVPLY 383
           +P P ++P  +   G    R +PR+   +   R +R+  PL+
Sbjct: 393 SPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRIVFPLF 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,015
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)