Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M19
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.0  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   5.2  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   5.2  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   5.2  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    25   6.8  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   6.8  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    24   9.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   9.0  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    24   9.0  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 176  DVGFECCLRDGKKWLQVMGNILNK 247
            DVG E   +DG+ +L ++ N  N+
Sbjct: 1839 DVGLELFFKDGRSFLTILSNTKNR 1862


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 153 LKRQGFLQTWDSNAA*EMGK 212
           L RQ F+QT DSNAA  + K
Sbjct: 492 LTRQCFIQTQDSNAAFALAK 511


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 254 LPFFYNNN*FVLKNGGNL 307
           L F YNN+ +V KN GN+
Sbjct: 183 LSFVYNNDLYVRKNDGNV 200


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  LGSVTPPAVSPDIAPSDYHLFRSMAHALTAQRFTSYED 123
           L   TP  VSP I+ + +H+ R  + A   Q+    E+
Sbjct: 548 LSMTTPSGVSPSISKNGFHVVRVPSDAAGFQQRQQQEE 585


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 70  FRSMAHALTAQRFTSYEDTKNW-VYSWIASKDKDFF 174
           FR++ HA+ A+   S  D + W V+     +D  +F
Sbjct: 75  FRTLNHAINAESLPSLPDQEPWNVFQNAKKRDGQYF 110


>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 136 VYSWIASKDKDFFRR 180
           ++SW A + KDF+R+
Sbjct: 7   LFSWAAKRSKDFYRK 21


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 137 TQFLVSS*DVNRCAVRACA 81
           TQ LV S D+N   +RACA
Sbjct: 45  TQTLVRSFDINDVPIRACA 63


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 337 YLRGLETSRW*HYGYSSFIMIFVASCCIMLRS 432
           Y+ G+ET+ +   G+S FI++   S  + + S
Sbjct: 313 YMMGIETTNFFATGFSFFIILLFFSLLVAMAS 344


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 67   LFRSMAHALTAQRFTSYEDTKNWVYSWIAS 156
            +FR M   L  Q    Y   K ++  W AS
Sbjct: 2341 IFRRMRKTLKKQTIEEYSINKKYLMQWFAS 2370


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 29  PPYHQTLHRPIITCSGPWHML*RRSGSH 112
           PP  + LH  +I  +GP  +  R  GSH
Sbjct: 23  PPPKEVLHTRVIVPNGPEEIKLRLVGSH 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,639
Number of Sequences: 5004
Number of extensions: 39973
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)