Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M19
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0041 - 290333-290698,290854-291861                               31   0.31 
07_01_0986 - 8314733-8314783,8315895-8318381                           28   2.9  
01_06_0388 + 28927211-28928467                                         28   2.9  
04_04_0421 - 25096422-25096594,25096658-25096830,25096918-250969...    28   3.8  
02_05_0961 - 33103024-33103555,33107323-33107432,33107577-331077...    27   5.1  
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494...    27   6.7  

>08_01_0041 - 290333-290698,290854-291861
          Length = 457

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 91  LTAQRFTSYEDTKNWVYSWIASKDKDFFRRGIRMLPERWEKVVASD 228
           L A+ +T    T+ +V +W  S+D  F+      +PER+   +A D
Sbjct: 333 LQAEGYTIPSGTRVFVNAWALSRDPSFWENAEEFIPERFLNSIAPD 378


>07_01_0986 - 8314733-8314783,8315895-8318381
          Length = 845

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 277 LICVKKWRKLICTPNIYTY-IYLRGL 351
           L+C +  +++ C PN YTY I + GL
Sbjct: 723 LVCFQSMKEMKCPPNTYTYSILINGL 748


>01_06_0388 + 28927211-28928467
          Length = 418

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 79  MAHALTAQRFTSYEDTKNWVYSWIASKDKDFFRRGIRMLP-ERW 207
           M   L+A R   Y D    V  W++++ KDF  R     P ERW
Sbjct: 204 MEDILSAVRRIGYTDAVPEVPEWLSAEAKDFLARCFARNPRERW 247


>04_04_0421 -
           25096422-25096594,25096658-25096830,25096918-25096927,
           25097230-25097452
          Length = 192

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +3

Query: 30  RRITRHCTVRLSP-----VQVHGTCSDGAAVHIL*RYQKLGLFVDSLKRQG 167
           R++    T R SP     V +   C DG AVHI+     +G  +D ++ +G
Sbjct: 11  RQLRAPTTARRSPPPFNIVAIKDVCEDGRAVHIVMELFIVGELLDKIQEEG 61


>02_05_0961 -
           33103024-33103555,33107323-33107432,33107577-33107707,
           33107779-33107870,33108210-33108337,33108658-33108723,
           33108815-33108907,33108979-33109128,33109553-33109578,
           33109674-33109826,33110140-33110228,33110335-33110418,
           33110564-33110598,33110702-33110842,33111045-33111128,
           33111208-33111215,33111590-33111746
          Length = 692

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 172 RNPCLLRLSTNKPNFWY 122
           RNP +LR S N+PN +Y
Sbjct: 182 RNPLILRASFNRPNIFY 198


>04_03_0116 -
           11448012-11448525,11448693-11448763,11449139-11449421,
           11449520-11449672,11449750-11450219,11451470-11451631,
           11451718-11451987,11452229-11452633
          Length = 775

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 80  WHML*RRSGSHLMKIPKIGFIRG*PQKTRISSDVGFECC 196
           W     R G H    PK+G  +  P + ++S   GF  C
Sbjct: 527 WDQYVARGGRHKDGHPKLGHKKDFPIRQQVSDQCGFHVC 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,572,006
Number of Sequences: 37544
Number of extensions: 256038
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)