Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M17
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   2.4  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   2.4  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    26   2.4  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   5.6  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    24   7.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   7.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   9.8  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    24   9.8  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143 LTRNPTAQPTAPSSL-SVDYSTVRKFHNNFNSYVIKLI 253
           LTRNP   P+A SS+ S+D   V +   + N   I LI
Sbjct: 639 LTRNPLVYPSAKSSIKSIDIKRVLENVGSLNHEDILLI 676


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 16  GSYPGG*LENALPPCYGSLRCFPSPKSEAGFRDGSVRV 129
           G++P     N LPP Y  L   PSP S +   D    V
Sbjct: 431 GAFPNS---NTLPPRYNELGSLPSPNSVSFTEDSRPNV 465


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = +2

Query: 236 YVIKLIVIFTIS-----PISNLHQRNGLRPQHRHHHIPTR 340
           + +++++IF+++     P  +L  RNG R  HR   IPT+
Sbjct: 150 WTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTK 189


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 125 ESNSCRLTRNPTAQPTAPSSL-SVDYSTVRKFHN 223
           E N CRLT N    P   S++ S+  S V+ F++
Sbjct: 52  EENICRLTPNSAFVPVRDSAVASISTSKVQDFNS 85


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 158 SDSASIDMNSTLTDPSLKPASDFGEGKH 75
           S + + +M++   DP++   SDF +G H
Sbjct: 377 STNLTPNMSANSVDPAISQTSDFWKGPH 404


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRKFHNNF 229
           S +++RNP   PT P ++  +   +   HN +
Sbjct: 232 SLQVSRNPLRWPTVPQAVIYNSPYIITLHNQY 263


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 149 RNPTAQPTAPSSLSVDYSTVRKFHNNFNSYVIKLIVIFTISP 274
           RNP+A  +  S +S+D S    +  N + ++    +   +SP
Sbjct: 197 RNPSAAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSP 238


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  HAMDPYDVFLHRNLRPVLETDR*ESNSCRLTRN 154
           H + PYD +LHR     L+    ESN   +TR+
Sbjct: 341 HLVAPYDQYLHR-FPAYLQQLSMESNGKAITRS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,180
Number of Sequences: 5004
Number of extensions: 30945
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)