Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M17
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 28 3.1
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 27 4.1
08_02_0626 - 19443797-19443917,19444136-19444761 27 5.5
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 27 5.5
07_03_1650 + 28392401-28392823,28392975-28393052,28393150-283932... 27 7.2
04_04_1377 - 33064906-33065607 27 7.2
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 27 7.2
02_02_0310 - 8842286-8843314 27 7.2
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 26 9.6
05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896 26 9.6
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 210 LTVE*STESDDGAVGCAVGFRVNRHEFDSHRSVSKTGLRF 91
+ VE + DDG + VGFRV + D+ R K G+R+
Sbjct: 35 IKVECTIPKDDGTLATFVGFRV---QHDNSRGPMKGGIRY 71
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 210 LTVE*STESDDGAVGCAVGFRVNRHEFDSHRSVSKTGLRF 91
+ VE + DDG + VGFRV + D+ R K G+R+
Sbjct: 35 IKVECTIPKDDGTLASYVGFRV---QHDNARGPMKGGIRY 71
>08_02_0626 - 19443797-19443917,19444136-19444761
Length = 248
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 168 GCAVGFRVNRHEFDSHRSV 112
GC V F+V R ++D+HR V
Sbjct: 167 GCDVTFQVERSDYDAHRVV 185
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 210 LTVE*STESDDGAVGCAVGFRVNRHEFDSHRSVSKTGLRF 91
+ VE + DDG + +GFRV + D+ R K G+R+
Sbjct: 35 IKVECTIPKDDGTLASFIGFRV---QHDNARGPMKGGIRY 71
>07_03_1650 +
28392401-28392823,28392975-28393052,28393150-28393292,
28393719-28393789,28393881-28393976,28394169-28394261,
28394351-28394433
Length = 328
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 5 EVRVVATQAGN*KMPYHHAMDPYDVFLHRNLRPVLETDR*ESNSCRLTRNP 157
E+ +A +G H A+DP + PV + R + N C+LTR P
Sbjct: 116 ELARLAVDSGGDPGAIHRALDP-------TMLPVPDVQRAKRNKCQLTRTP 159
>04_04_1377 - 33064906-33065607
Length = 233
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 161 AQPTAPSSLSVDYSTVRKFHNNFNSYVIKLIVIFTISPISNLHQRNGLRPQHRHHH 328
++P P ++ +++RK S V L ++P ++ +R H HHH
Sbjct: 134 SEPREPDGGTLSAASIRKKAIEVGSRVDALQTGMMVAPTTHHRERQKHHHHHHHHH 189
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 113 TDR*ESNSCRLTRNPTAQPTAPSSLSVDYSTVRKFHNNFNSYVIKLI 253
TD E+ SC N +QP+ +S++V + + + N +I ++
Sbjct: 715 TDTSETGSCNTGNNIASQPSTSTSIAVSEGELLQPERSTNGILINVV 761
>02_02_0310 - 8842286-8843314
Length = 342
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 278 SNLHQRNGLRPQHRHHHIPTR 340
S +H G R H HHH+ R
Sbjct: 293 SRMHHHRGCRFHHHHHHLSFR 313
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 152 NPTAQPTAPSSLSVDYSTVRKF 217
NP+ P++ SSLS YS V +F
Sbjct: 11 NPSHAPSSSSSLSASYSRVLRF 32
>05_03_0349 - 12799736-12799954,12803466-12803595,12804124-12804896
Length = 373
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 73 RCFPSPKSEAGFRDG 117
RC P+PK EAG DG
Sbjct: 164 RCRPAPKLEAGMSDG 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,228
Number of Sequences: 37544
Number of extensions: 213970
Number of successful extensions: 529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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