Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M17
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    30   0.69 
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    30   0.69 
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    28   2.1  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    27   6.4  
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    27   6.4  
Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      26   8.5  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    26   8.5  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    26   8.5  

>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 152 SASIDMNSTLTDPSLKPASDFGEGKHRK 69
           ++SID+NST T P+ KP S +G+   RK
Sbjct: 258 NSSIDINSTKTLPNTKP-SQYGQASRRK 284


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 152 SASIDMNSTLTDPSLKPASDFGEGKHRK 69
           ++SID+NST T P+ KP S +G+   RK
Sbjct: 258 NSSIDINSTKTLPNTKP-SQYGQASRRK 284


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 89  RNLRPVLETD-R*ESN--SCRLTRNPTAQPTAPSSLSVDYSTVRKFHNNFNSYVIKL 250
           R L P + TD R   N  +  L  +P  +PT  S +   Y T+R+F  NF+ Y+ K+
Sbjct: 52  RPLSPTMFTDGRTPVNISAKHLKDHPLHEPTGTSEVLTFYPTMREF-KNFSQYIKKI 107


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 58  CYGSLRCFPSPKSEAGFRDGSVRVEFMSIDAESDRTTHCAIIAF 189
           C   L  FP PK+EA   +G   V FM    ++ R  H  ++ F
Sbjct: 7   CTQFLNEFPEPKTEAAINNGI--VSFMDALVKAYRPFHYYVLTF 48


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 43  NALPPCYGSLRCFPSPKSEAGFRDGSVRVEF 135
           N +P C+G   C  + K++  +     R+EF
Sbjct: 76  NKIPTCFGQFNCTEAQKNKETYERQCERIEF 106


>Z99280-5|CAB16501.2|  413|Caenorhabditis elegans Hypothetical
           protein Y57G11B.3 protein.
          Length = 413

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRKFHNNFNSYVIKLIVIFTISPISNLHQRNGL-RP 310
           +C    NP + P +P+  S  +   +K  +NF+ +++   V    +P + +  R  + R 
Sbjct: 200 TCPFKGNPPSGPQSPAVQSPLFGRFQKKISNFSIFILFSSVSDLNNPDAKIKMRQEMDRI 259

Query: 311 QHRHHHIPTRDLLVWLK 361
             R  HI T    V  K
Sbjct: 260 TERQKHIFTETFPVIFK 276


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRK 214
           + RLT NP + PT+ SS ++  + ++K
Sbjct: 6   TARLTSNPASIPTSSSSSAISAAAIQK 32


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRK 214
           + RLT NP + PT+ SS ++  + ++K
Sbjct: 6   TARLTSNPASIPTSSSSSAISAAAIQK 32


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 278 SNLHQRNGLRPQHRHHHIPTRDLLVWLKI 364
           +N H+ N    QH  +H  T   L+WL I
Sbjct: 647 TNQHETNNSHQQHNAYHHTTTANLLWLVI 675


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRK 214
           + RLT NP + PT+ SS ++  + ++K
Sbjct: 6   TARLTSNPASIPTSSSSSAISAAAIQK 32


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRK 214
           + RLT NP + PT+ SS ++  + ++K
Sbjct: 6   TARLTSNPASIPTSSSSSAISAAAIQK 32


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 134 SCRLTRNPTAQPTAPSSLSVDYSTVRK 214
           + RLT NP + PT+ SS ++  + ++K
Sbjct: 6   TARLTSNPASIPTSSSSSAISAAAIQK 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,995,541
Number of Sequences: 27780
Number of extensions: 177061
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)