Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M16
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    71   6e-13
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    27   7.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 35/89 (39%), Positives = 51/89 (57%)
 Frame = -2

Query: 533 KLPAHLDDAYFXXXXXXXXXXXXXKQGEDIFATKKEKYVPSEQRKADQKLVDEAVIKAIR 354
           K+P H++D YF               G++IFA+ K +Y  SEQRK D K VD  ++ AI+
Sbjct: 135 KIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIK 188

Query: 353 LRPDKKTLRGYLRASFGLRSSQFPHRLRF 267
             P+ K L GYL   F L  +Q+PH+++F
Sbjct: 189 KHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 452 EDIFATKKEKYVPSEQRKADQK-LVD-EAVIKAIRLRPDKKT 333
           E+ FA  + KY   +QRK +++ L+D E+++  +  +PD  T
Sbjct: 124 EEKFAYNRRKYESRKQRKTEERPLIDIESLMPMLESKPDVAT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,518
Number of Sequences: 27780
Number of extensions: 127413
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)