Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M10
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 174 2e-44
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 174 2e-44
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 174 2e-44
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 41 3e-04
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 30 0.69
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 30 0.69
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 30 0.69
Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical... 27 6.4
Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical pr... 26 8.5
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 174 bits (423), Expect = 2e-44
Identities = 79/108 (73%), Positives = 96/108 (88%)
Frame = -1
Query: 395 FLASESLIKQIPRLLGPGLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAV 216
F+ASESLIKQIPR+LGPGL+KAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAV
Sbjct: 79 FIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAV 138
Query: 215 GHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 72
GHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 139 GHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 174 bits (423), Expect = 2e-44
Identities = 79/108 (73%), Positives = 96/108 (88%)
Frame = -1
Query: 395 FLASESLIKQIPRLLGPGLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAV 216
F+ASESLIKQIPR+LGPGL+KAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAV
Sbjct: 48 FIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAV 107
Query: 215 GHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 72
GHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 108 GHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 174 bits (423), Expect = 2e-44
Identities = 79/108 (73%), Positives = 96/108 (88%)
Frame = -1
Query: 395 FLASESLIKQIPRLLGPGLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAV 216
F+ASESLIKQIPR+LGPGL+KAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAV
Sbjct: 109 FIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAV 168
Query: 215 GHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 72
GHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 169 GHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = -1
Query: 395 FLASESLIKQIPRLLGPGLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VA 219
FL+ + + LG +A K P +Q+ ++ I+ T+ + +++ + S V
Sbjct: 307 FLSDGRVYNSVKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVN 366
Query: 218 VGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 84
VGH+ + +L +N+ + + S + N+RS+++ ++ G P
Sbjct: 367 VGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 0.69
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 344 GLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 165
G + G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 164 INFLVSLLKKH-WQNVRSL 111
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 0.69
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 344 GLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 165
G + G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 164 INFLVSLLKKH-WQNVRSL 111
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.9 bits (64), Expect = 0.69
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 344 GLDKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 165
G + G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 164 INFLVSLLKKH-WQNVRSL 111
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical
protein C49F8.1 protein.
Length = 407
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 227 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 84
SV + H+ ++P+ L Q L+ F + W+ +R MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393
>AC025726-28|AAK73928.1| 118|Caenorhabditis elegans Hypothetical
protein Y71G12B.27 protein.
Length = 118
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 75 QSLGWSHCRLHMQRAHIL 128
QSLGW H +H HIL
Sbjct: 48 QSLGWEHYMVHNPEKHIL 65
>Z79753-7|CAB02085.2| 448|Caenorhabditis elegans Hypothetical
protein F20G2.5 protein.
Length = 448
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 252 EFDGSLDFINFLCHGFLVG*ETRELASLIETRTKETRNL 368
EF GS D +FL + +VG + +ET TK T NL
Sbjct: 393 EFTGSTDISSFLLNFEIVGNPATATTAQLETTTK-TANL 430
>Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical
protein K08F8.7 protein.
Length = 197
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 9 RHEGFFFFILRY*SQIYCVNLIQSLGWS 92
+H +F+ +LR+ + I+C+ +I +G S
Sbjct: 16 QHSFYFYLVLRFLAAIFCIIVIFIIGLS 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,154
Number of Sequences: 27780
Number of extensions: 212678
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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