Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M09
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    81   7e-17
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    29   0.40 
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    27   0.93 
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   5.0  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   5.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   5.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    24   8.7  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 81.0 bits (191), Expect = 7e-17
 Identities = 39/74 (52%), Positives = 54/74 (72%)
 Frame = +1

Query: 208 GNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTS 387
           GN  KL +++ ILG  F  EI N++ DLPE+QG + EV ++KC+ AA  +K PVLVEDT 
Sbjct: 12  GNKHKLADVKNILGDRF--EIKNHDYDLPEIQGSVKEVVLEKCKAAAEIVKGPVLVEDTW 69

Query: 388 LCFTALHGLPGPYI 429
           L + A++GLPGPY+
Sbjct: 70  LGYKAMNGLPGPYV 83


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 220 KLEELRAILGSS-FPLEIVNYNLDLPEL 300
           K++EL   +    FP+EIVN N+D PEL
Sbjct: 233 KIKELAKYIDPKLFPIEIVNDNIDNPEL 260


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 292 PELQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHGLPGP 423
           P L+G + E+S++  Q+  S    P    D SL    ++G   P
Sbjct: 307 PSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVNGSQEP 350


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 86  FKDYLNKKHTNKNNQV*RSEITFFWF 9
           F++Y  ++ TNK++   R ++T  WF
Sbjct: 103 FEEYKKQQGTNKSHSEAREKVTEAWF 128


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 379 DTSLCFTALHGLPGPY 426
           D +  F ALHG+ GPY
Sbjct: 207 DFTFVFDALHGITGPY 222


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +3

Query: 261 LRNSKLQPRFARIARGD*RSVY---KEMSRSRK*IENTCVSRRHIVMFYRTTRT 413
           LR+ ++  +F R ARG   + +   +E + + + ++NT +  RH+V+ Y +  T
Sbjct: 747 LRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYASNAT 800


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 202 SPGNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEV 321
           +P ++KKLEELR   G    +     +L  P+   E DE+
Sbjct: 595 TPNDLKKLEELREQAGVDRLVNGPKRSLKRPDDAVEADEI 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,261
Number of Sequences: 5004
Number of extensions: 30069
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)