Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M09
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0257 - 16255063-16255183,16255258-16255334,16255861-162559...    97   5e-21
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    27   6.4  

>10_08_0257 -
           16255063-16255183,16255258-16255334,16255861-16255973,
           16256006-16256016,16256328-16256337,16256423-16256486,
           16256582-16256646,16257339-16257474
          Length = 198

 Score = 97.1 bits (231), Expect = 5e-21
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = +1

Query: 208 GNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTS 387
           GN KKLEE+RAILGSS P +  +  LDLPELQGE +++S +K + AAS++  PVLVEDT 
Sbjct: 21  GNAKKLEEVRAILGSSIPFQ--SLKLDLPELQGEPEDISKEKARMAASQVNGPVLVEDTC 78

Query: 388 LCFTALHGLPGPYI 429
           LCF AL GLPGPYI
Sbjct: 79  LCFNALKGLPGPYI 92


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +1

Query: 196 PSSPGNVKKLEELRAILGS----SFPLEIVNYNLDLPELQ----GEIDEVSIKKCQEAAS 351
           P+  GN+K L+ELR  +      +F  E++    DL  L      E+DEVS+K   E+  
Sbjct: 651 PAGLGNLKSLQELRVYVSDDSCPNFAAELLKLT-DLKILHINWYWEVDEVSLKDLVESLR 709

Query: 352 RLK 360
            L+
Sbjct: 710 SLR 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,931
Number of Sequences: 37544
Number of extensions: 162904
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)