Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M09
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-1|AAG00041.1|  184|Caenorhabditis elegans Yeast ham (hydr...    88   2e-18
AY052772-1|AAL14111.1|  184|Caenorhabditis elegans HAM-1-like pr...    88   2e-18
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    27   7.5  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    27   7.5  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    27   7.5  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    26   10.0 

>U13642-1|AAG00041.1|  184|Caenorhabditis elegans Yeast ham
           (hydroxylaminopurinesensitivity) related protein 1
           protein.
          Length = 184

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 56/74 (75%)
 Frame = +1

Query: 208 GNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTS 387
           GNVKKLEE++AIL +    E+ N ++DL E QGE + ++ +KC+EA   +K PVLVEDTS
Sbjct: 11  GNVKKLEEVKAILKN---FEVSNVDVDLDEFQGEPEFIAERKCREAVEAVKGPVLVEDTS 67

Query: 388 LCFTALHGLPGPYI 429
           LCF A+ GLPGPYI
Sbjct: 68  LCFNAMGGLPGPYI 81


>AY052772-1|AAL14111.1|  184|Caenorhabditis elegans HAM-1-like
           protein protein.
          Length = 184

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 56/74 (75%)
 Frame = +1

Query: 208 GNVKKLEELRAILGSSFPLEIVNYNLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTS 387
           GNVKKLEE++AIL +    E+ N ++DL E QGE + ++ +KC+EA   +K PVLVEDTS
Sbjct: 11  GNVKKLEEVKAILKN---FEVSNVDVDLDEFQGEPEFIAERKCREAVEAVKGPVLVEDTS 67

Query: 388 LCFTALHGLPGPYI 429
           LCF A+ GLPGPYI
Sbjct: 68  LCFNAMGGLPGPYI 81


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 280 NLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHG 411
           N  L ELQ + DE+ +K       ++K  +  +D     +A++G
Sbjct: 78  NAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISAING 121


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 280 NLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHG 411
           N  L ELQ + DE+ +K       ++K  +  +D     +A++G
Sbjct: 98  NAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISAING 141


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 280 NLDLPELQGEIDEVSIKKCQEAASRLKIPVLVEDTSLCFTALHG 411
           N  L ELQ + DE+ +K       ++K  +  +D     +A++G
Sbjct: 114 NAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISAING 157


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 83  KDYLNKKHTNKNNQV*RSEITFFWFP 6
           K YLN+    K++ V R  + F WFP
Sbjct: 75  KCYLNRHEDQKSSCVIRIPVPFSWFP 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,108
Number of Sequences: 27780
Number of extensions: 166668
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)