Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M08
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 142 2e-35
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 142 2e-35
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.27
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 0.82
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 1.1
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.1
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 5.8
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 5.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 5.8
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 5.8
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 142 bits (345), Expect = 2e-35
Identities = 62/90 (68%), Positives = 79/90 (87%)
Frame = +2
Query: 23 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 202
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 203 ARVRKNTEARRKGRHCGFGKRRGTANARMP 292
R+RK A+R GRH G+GKR+GTA ARMP
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMP 90
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 363 KIDRHLYHSLYMKAKGNVVQEQ 428
KID+HLYH+LY++AKGN + +
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHK 135
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 142 bits (345), Expect = 2e-35
Identities = 62/90 (68%), Positives = 79/90 (87%)
Frame = +2
Query: 23 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 202
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 203 ARVRKNTEARRKGRHCGFGKRRGTANARMP 292
R+RK A+R GRH G+GKR+GTA ARMP
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMP 90
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 363 KIDRHLYHSLYMKAKGNVVQEQ 428
KID+HLYH+LY++AKGN + +
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHK 135
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.27
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 225 SVFLRTRAREWTATGFLMTRPSLIILRMFC 136
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.9 bits (59), Expect = 0.82
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 422 LNNITLRLHVQGMVEMPVYLLRCSVFKQQLTEHP-LPLNRIVLFV 291
+N++T +LH V + +L + QQ+TE P LP+ R LF+
Sbjct: 1055 VNDLTGKLHSANEVSKSLLILNAAT-TQQITEKPLLPITRCRLFL 1098
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 265 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 143
P A + SF +R CV N + NW+ + I HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 145 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 50
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 5.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 286 SSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGIS 125
S ISC SP+T TV SF A L + + G W + +L L S +S
Sbjct: 291 SIISCQSPITTLTV-SFDASLLI-SGDKDGNVLVWDSVSRQVLRRLVQYYSPVS 342
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +2
Query: 83 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 229
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 230 RRKGR 244
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 137 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 253
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 26 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 151
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,518
Number of Sequences: 5004
Number of extensions: 35255
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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