Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M06
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   1.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   3.4  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   3.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   4.5  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    23   5.9  
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    23   5.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    23   5.9  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   7.8  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 32  VRKHEWESAAKRASNRSWDKVYVVAKDGRMAF 127
           V+   W + A+R    SW + Y V  D  M F
Sbjct: 423 VKITSWRTEARRKMVNSWRESYAVQNDAIMNF 454


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 116  RMAFYKDQKAYKASPDQYWRGEAPFDLNGAV 208
            R+ F  D  ++   P  YW  +A + L GA+
Sbjct: 2368 RLTFILDATSWDTIPSIYWIKQANYILLGAI 2398


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 35  RKHEWESAAKRASNRSWDKVYVVAKDGRM 121
           +K  W+++   +++    K YV+ K+G++
Sbjct: 220 KKGLWQASVTSSTHERKSKTYVITKNGKL 248


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 83   WDKVYVVAKDGRMAFYK 133
            W K Y +   G++ FYK
Sbjct: 1068 WKKKYCIVDSGKLIFYK 1084


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 48  GSLRLNALLTDPGIKCTWSLRTV 116
           GS+ +N +  DPGI   ++++T+
Sbjct: 115 GSICMNEIGVDPGIDHLYAIKTI 137


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 170 WRGEAPFDLNGAVVEVAANY 229
           W    PF+ NG   E+A+ Y
Sbjct: 217 WEPYTPFERNGLAKEIASAY 236


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 126 NAMRPSLATTYTLSQDLLEARLAADSHSCLRTNVPSTPSS 7
           +A   S +    LSQ+LL+ RLA      L  N  S+ SS
Sbjct: 848 DAPTSSYSVRQMLSQELLKKRLADIKKQTLTDNPTSSNSS 887


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 238 LPSIVGGYFDNGPVQVEGR 182
           +PSI  G F   PVQ  GR
Sbjct: 17  IPSISAGSFSTMPVQHRGR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,225
Number of Sequences: 5004
Number of extensions: 13106
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)