Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M06
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 27 2.8
11_06_0610 - 25449085-25453284 26 3.7
07_03_1784 - 29492511-29492804,29492913-29492999,29493076-294932... 26 3.7
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 25 6.4
09_02_0376 + 8140260-8140811,8141390-8141464,8141542-8141598,814... 25 6.4
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 25 6.4
03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675... 25 6.4
11_01_0580 + 4624111-4624549,4625243-4625955 25 8.5
01_06_1395 + 37010446-37010895 25 8.5
01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496 25 8.5
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 41 HEWESAAKRASNRSWDKVYVVAKD 112
H W A R S WD ++V+ D
Sbjct: 510 HNWSQQAMRHSELDWDAIHVLRDD 533
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 89 KVYVVAKDGRMAFYKDQKAYKASPDQYWRGEAPFDLNGAVVEVA 220
K Y+ + R AFY D K Y + W G NG + A
Sbjct: 88 KAYIALQAWRRAFYSDPKGYTNN----WTGNDVCSYNGVICYAA 127
>07_03_1784 -
29492511-29492804,29492913-29492999,29493076-29493222,
29493522-29493690,29493777-29494015,29494111-29494356,
29494419-29495084
Length = 615
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 95 YVVAKDGRMAFYKDQKAYKASPDQYWRGEAP 187
Y+ AKDG A K+ A+ D W E P
Sbjct: 263 YLQAKDGNAATIKEDAKAAATDDAAWGKEVP 293
>11_04_0071 -
13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 111 SLATTYTLSQDLLEARLAADSHSCLRTNVPSTPSSSC 1
SL + T + +LL+ L H L + PST S+SC
Sbjct: 81 SLESLATDADNLLDEMLYHQIHRRLHPDEPSTSSNSC 117
>09_02_0376 +
8140260-8140811,8141390-8141464,8141542-8141598,
8142645-8142833
Length = 290
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 2 HEDEGVEGTLVRKHEW 49
HE+EG +G VR+H W
Sbjct: 225 HEEEGQQGQGVRQHFW 240
>06_03_1130 -
27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 33 YANTNGSLRLNALLTDPGIKCTWSL---RTVAW 122
Y+N+NG+L A P I+ WSL R++ W
Sbjct: 293 YSNSNGALSTVAPPPAPTIQIDWSLNQARSIRW 325
>03_06_0747 -
35967119-35967185,35967325-35967422,35967533-35967574,
35967734-35967782,35967971-35968047,35968306-35968362,
35968511-35968611,35968698-35969106
Length = 299
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 8 DEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYKASPD 163
DE V+ +++ + K+A RS ++ AFY DQKA ++ +
Sbjct: 67 DEVVDSNVLQYCSIDGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEE 118
>11_01_0580 + 4624111-4624549,4625243-4625955
Length = 383
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 89 KVYVVAKDGRMAFYKDQKAYKASPDQYWRGEAPFDLNGAVVEVAANYTR 235
K VVAKDG F +A A+P RG + V E N TR
Sbjct: 62 KTVVVAKDGTANFTTITQALGAAPP---RGRFGIFVKAGVYEETVNITR 107
>01_06_1395 + 37010446-37010895
Length = 149
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 77 RSWDKVYVVAKDGRMAFYKDQKAYKAS 157
++W + + V K GR+ ++KD +AS
Sbjct: 36 KTWRRRWFVLKQGRLFWFKDSGVTRAS 62
>01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496
Length = 582
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 89 KVYVVAKDGRMAFYKDQKAYKASPDQYWRGEAPFDLNGAVVEVAANYTRKK 241
+ + V D + + + +P Y G+AP DLNG V++ + + K
Sbjct: 342 ETFDVVVDFSQSTSSEAELVNTAPYPYPDGQAPNDLNGKVMKFVISPAKAK 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,288,546
Number of Sequences: 37544
Number of extensions: 98596
Number of successful extensions: 279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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