Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M04
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    34   0.001
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.13 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.40 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.93 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +1

Query: 91  FESLNGYNSNASDGENKVKLRPNGNNCETLSINQQSNSNESKDNPLNANKTIISSENTD- 267
           + + N  N NA D +N      N  N +  + N+Q N N   DN  N NK   + +N + 
Sbjct: 422 YHNQNAGNQNA-DNQNADNQNANNQNADNQNANKQ-NGNRQNDNRQNDNKQNGNRQNDNK 479

Query: 268 LIGDQSTHNKSEKEDDEKSLDPESDENPTSSPNTGKRIGVR 390
             G++   NK        +   ++ +N  +  N  KR G R
Sbjct: 480 QNGNRQNDNKQNGNRQNGNKQNDNKQN-GNRQNDNKRNGNR 519



 Score = 31.5 bits (68), Expect = 0.006
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 103 NGYNSNASDGENKVKLRPNGNNCETLSIN-QQSNSNESKDNPLNANKTIISSENTDLIGD 279
           N  N N  +G  +   + NGN       N  + N N+  DN  N N+   +  N +   D
Sbjct: 463 NRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQND 522

Query: 280 -QSTHNKSEKEDDE 318
            Q+  N + + D++
Sbjct: 523 NQNNQNDNNRNDNQ 536



 Score = 28.7 bits (61), Expect = 0.043
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = +1

Query: 94  ESLNGYNSNASDGENKVKLRPNGNNCETLSIN-QQSNSNESKDNPLNANKTIISSENTDL 270
           ++ N  N N  +   +   + NGN       N  + N N+   N  N NK   + +N + 
Sbjct: 450 QNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNR 509

Query: 271 IGDQSTHNKSEKEDDEKSLDPESDEN 348
             D   +   + ++     D   ++N
Sbjct: 510 QNDNKRNGNRQNDNQNNQNDNNRNDN 535



 Score = 25.8 bits (54), Expect = 0.30
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = +1

Query: 103 NGYNSNASDGENKVKLRPNGNNCETLSIN---QQSNSNESKDNPLNANKTIISSE 258
           N  N N  +G  +   + NGN       N   Q  N N   DN  N N+   SS+
Sbjct: 488 NKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSK 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
 Frame = +1

Query: 160 GN-NCETLSINQQSNSNESKDNPLNANKTIISSENTDLIGDQSTHN-----KSEKEDDEK 321
           GN N    + N  +N+N + +N  N N     + N +  GD   H          +  E 
Sbjct: 231 GNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPDPGEV 290

Query: 322 SLDPESDENPTSSPNTGKRI 381
            L PE+   P S+   G  I
Sbjct: 291 DLPPETQPTPPSATLVGTTI 310



 Score = 24.2 bits (50), Expect = 0.93
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 46  QRNFARAIFADGDDGFESLNGYNSNASDGENKVKLRPNGNNCETLSINQQSNSNESKD 219
           QRN   +    G+    + N  N+N ++  N      NGN       N  SN+N + D
Sbjct: 220 QRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNG------NGASNNNNNGD 271


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +1

Query: 160 GNNCETLSINQQSNSNESKDNPLNANKTIISSENTDLIGDQSTHNKSEKEDDEKSLDPES 339
           GNN  T+   ++ N+ E   +P+  N+T    +  D I      + S+   +++ ++ +S
Sbjct: 149 GNNKITMKSKKEQNAEEDIVDPVEENETY---DEFDTIRIPIVRSLSKSPPNDEGIETDS 205

Query: 340 DENPTS 357
           D    S
Sbjct: 206 DRRKGS 211


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 157 NGNNCETLSINQQSNSNESKDNPLNANKTIISSEN 261
           N N  + +      N N  K+N  NAN    +++N
Sbjct: 416 NNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQN 450



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/42 (21%), Positives = 18/42 (42%)
 Frame = +1

Query: 112 NSNASDGENKVKLRPNGNNCETLSINQQSNSNESKDNPLNAN 237
           N++  +      ++   N  +    N + N+N  K+N  N N
Sbjct: 411 NTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 112 NSNASDGENKVKLRPNGNNCETLSINQQSNSNESKDNPLNANKTIIS 252
           NSN S+       RP+       ++ Q  +  + K++    +KTI++
Sbjct: 37  NSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILA 83



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 199 NSNESKDNPLNANKTIISSENTDLIGDQSTHNKSEKEDDEKSLDPESDENPTSSPNTGKR 378
           +S  S + P + N+ +  +EN +          +    DE+ ++  +DE   +SPN+  R
Sbjct: 531 DSKSSTETPPSYNQ-LNYNENIERFFKSKPPVATMYGSDEEIINSSNDEGGKTSPNSAVR 589


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 112 NSNASDGENKVKLRPNGNNCETLSINQQSNSNESKDNPLNANKTIIS 252
           NSN S+       RP+       ++ Q  +  + K++    +KTI++
Sbjct: 37  NSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILA 83


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +1

Query: 103 NGYNSNASDGENKVKLRPNGNNCETLSINQQSNSNESKDN 222
           N YN N +   +  K     NN      +  S SN   +N
Sbjct: 423 NHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNRHNN 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,974
Number of Sequences: 438
Number of extensions: 2807
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)