Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M03
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 265 1e-71
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 32 0.28
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 32 0.37
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 32 0.37
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 30 1.1
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 30 1.1
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 30 1.1
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81496-4|CAI79124.1| 77|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 28 4.5
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 28 4.5
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 28 4.5
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 28 4.5
U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical pr... 28 5.9
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 28 5.9
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.9
U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical pr... 27 7.9
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 7.9
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 27 7.9
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 7.9
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 265 bits (650), Expect = 1e-71
Identities = 119/190 (62%), Positives = 150/190 (78%)
Frame = +3
Query: 9 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 188
++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKV+ V
Sbjct: 69 VRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSV 128
Query: 189 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNL 368
T K VP L T DGRT+RYPDP +KVND++ +IST KI D +KF+ GNL +TGGRN+
Sbjct: 129 RTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNV 188
Query: 369 GRVGTIVSRERHPGSFDIVHVKDSTGHTFATRLNNVFIIGNGTKAYISLPRGKGVRLTIA 548
GRVG I RER PG+ DI+H+KDS GH+FATR++NVF+IG G KA +SLP G G+RL+IA
Sbjct: 189 GRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIA 248
Query: 549 EERDKRIAAK 578
EERDKR+A K
Sbjct: 249 EERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.3 bits (70), Expect = 0.28
Identities = 35/161 (21%), Positives = 38/161 (23%), Gaps = 7/161 (4%)
Frame = +2
Query: 116 ERKVHYPPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARH- 292
+ K H P +H + E A D H G H G A H
Sbjct: 362 DEKKHAPAHHEHHEHKDGAHHEHKEGEHHEHAAHHDEHGVHHRHHG-EHHGTHHSPAHHG 420
Query: 293 LHQQDHGLHQVRLRQPL-HDHRRQESGSXXXXXXXXXXXXXXXXXXXQGLHRAHVRDQVK 469
H HG H P H H G H H
Sbjct: 421 EHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480
Query: 470 QRVH----NRQWHEGVHLPPAREG-SAPHHRGGAGQAHRSE 577
H H G H PA G HH A H E
Sbjct: 481 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGE 521
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 134 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 307
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 308 HGLHQVRLRQPLHDHRRQE 364
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.37
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 134 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 307
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 308 HGLHQVRLRQPLHDHRRQE 364
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +1
Query: 496 RRRTSPSRAGRECASPSRRSGTSASQRRSPDSSA 597
RRR SP+ A R SP RR S +RRSP SS+
Sbjct: 479 RRRRSPAAAPRRRQSPQRR--RSPRRRRSPSSSS 510
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 157 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTL 11
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL 211
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 157 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTL 11
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL 211
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 472 LFNLVANVCPVESLTCTMSKEPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 317
L N + P + ++ P + P+ P+ +PP M++ PE LM
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 472 LFNLVANVCPVESLTCTMSKEPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 317
L N + P + ++ P + P+ P+ +PP M++ PE LM
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 472 LFNLVANVCPVESLTCTMSKEPGWRSRETMVPTRPRFLPPVIMQRLPESNLM 317
L N + P + ++ P + P+ P+ +PP M++ PE LM
Sbjct: 660 LLNQPTSASPRRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLM 711
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 120 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 251
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 115 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTL 11
T+ N F FS T S+NP GY+ V TL
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTL 270
>Z81496-4|CAI79124.1| 77|Caenorhabditis elegans Hypothetical
protein F09C6.13 protein.
Length = 77
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 321 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVK 434
K DSGN + T R++ R+ V E H D+ H++
Sbjct: 12 KVDSGNTTINTTNRSINRIDNSVDYESHGLDTDLEHLQ 49
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 173 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQPLHDH 352
+G R PQ P + A P+ Q ++ + +Q H HQ RL+Q
Sbjct: 191 RGCPARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQ 250
Query: 353 RRQE 364
++Q+
Sbjct: 251 QQQQ 254
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 493 ARRRTSPSRAGRECASPSRRSGTSASQRRSPDSSA 597
+RRRTS R R+ S RR S S+ RSP SSA
Sbjct: 51 SRRRTSRDR--RDDRSSRRRRDRSHSRSRSPPSSA 83
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 493 ARRRTSPSRAGRECASPSRRSGTSASQRRSPDSSA 597
+RRRTS R R+ S RR S S+ RSP SSA
Sbjct: 79 SRRRTSRDR--RDDRSSRRRRDRSHSRSRSPPSSA 111
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 493 ARRRTSPSRAGRECASPSRRSGTSASQRRSPDSSA 597
+RRRTS R R+ S RR S S+ RSP SSA
Sbjct: 137 SRRRTSRDR--RDDRSSRRRRDRSHSRSRSPPSSA 169
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 493 ARRRTSPSRAGRECASPSRRSGTSASQRRSPDSSA 597
+RRRTS R R+ S RR S S+ RSP SSA
Sbjct: 138 SRRRTSRDR--RDDRSSRRRRDRSHSRSRSPPSSA 170
>U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical
protein F36D4.4 protein.
Length = 472
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 109 YIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLILV 2
YI+ N F FSM TT++ G++G++ + +++
Sbjct: 10 YIELNCKFSFSMATTAVFLCGHLGALSVILNLFVII 45
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = -2
Query: 532 TPFPRGREMYAFVPLPIMNTLFNLVANVCPVESLTCTMSKEPGWRSRETMVPTRPRFLPP 353
+P+PR R + I+ + L N+ ++ C + KE W S ++ P P
Sbjct: 11 SPYPRTRLPLYLYTVSIIISCSLLYWNLLYCKNYDCVVEKEFRWGSTRHLLQYFPVIAAP 70
Query: 352 VIMQRLPESNLMKSMILLVEMSSCTESFTLM 260
+IM + S L+ + + SSC +F M
Sbjct: 71 IIMV-ISFSWLI--IAIYYSSSSCVLTFNFM 98
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 133 STVSHLK-KPSTSCARCGASRP 195
+TV HL +P TSCA C ++RP
Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40
>U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical
protein D1014.2 protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 240 LRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 350
L +PD LIK+ Q++ STN F+ +D L ++
Sbjct: 34 LLFPDFLIKIRLLFQMNASTNATTTFVPWDHKTLQIV 70
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 187 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 44
T R LYL I +I+ L S++K NNSF+F I+ Y
Sbjct: 15 TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Frame = +2
Query: 341 LHDHRRQESGSXXXXXXXXXXXXXXXXXXXQGLHRAHVRDQVKQRVHNRQWHEGVHLPPA 520
L R+++ G H V D + + H G H PP+
Sbjct: 337 LEKRRQEKEKEQKAAAAAAAAAAAAAADPVAGDHENIVSDSTQASRSSTSSHRGFHGPPS 396
Query: 521 REGSAPHHRG-GAGQAHRSE 577
GS G G G H+ +
Sbjct: 397 HRGSYQGSSGRGGGGYHQQQ 416
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 180 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 314
R ++TG ++P +HD + + D L K + + +S+++ MD
Sbjct: 18 RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,940
Number of Sequences: 27780
Number of extensions: 298705
Number of successful extensions: 1143
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -