Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_M02
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 288 2e-78
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 285 2e-77
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 284 4e-77
01_05_0710 + 24492337-24493053 31 0.84
01_01_1101 + 8731427-8732938 29 1.9
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 2.6
03_05_0145 + 21254448-21255488 29 2.6
01_05_0674 - 24187820-24188713,24188809-24189204 29 2.6
01_05_0610 - 23636097-23638958 29 2.6
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582... 29 3.4
10_08_0510 + 18430580-18431781,18433176-18433554 29 3.4
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 3.4
10_01_0099 - 1202668-1203023,1203097-1206037 29 3.4
03_02_0539 - 9329572-9330729,9330988-9331041 29 3.4
02_04_0582 - 24076614-24076643,24076961-24077440 29 3.4
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 29 3.4
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 3.4
08_01_0915 + 9019499-9020971 28 5.9
06_02_0262 + 13563082-13563633 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 27 7.8
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 27 7.8
04_04_0950 + 29609484-29611025 27 7.8
03_05_0057 + 20350971-20351405 27 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 288 bits (706), Expect = 2e-78
Identities = 127/185 (68%), Positives = 153/185 (82%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCK
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCK 141
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
VR V G K +P+L T+DGRT+RYPDPLI ND++++D+ TNKI+DFIKFD GN+ M+TG
Sbjct: 142 VRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTG 201
Query: 546 GRKSG 560
GR +G
Sbjct: 202 GRNTG 206
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 285 bits (698), Expect = 2e-77
Identities = 124/185 (67%), Positives = 153/185 (82%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
VR V G K +PYL T+DGRT+RYPDPLI ND++++D+ TNKI+DFIKFD GN+ M+TG
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185
Query: 546 GRKSG 560
GR +G
Sbjct: 186 GRNTG 190
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 284 bits (696), Expect = 4e-77
Identities = 123/185 (66%), Positives = 153/185 (82%)
Frame = +3
Query: 6 RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
VR V G K +PYL T+DGRT+RYPDP+I ND++++D+ TNKI+DFIKFD GN+ M+TG
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185
Query: 546 GRKSG 560
GR +G
Sbjct: 186 GRNTG 190
>01_05_0710 + 24492337-24493053
Length = 238
Score = 30.7 bits (66), Expect = 0.84
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = -1
Query: 550 LPPVIMQRLPESNLMKSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATR 371
L P +RLP S L L M + T +F L++ + +RPS + LLG + +R
Sbjct: 76 LLPGSTERLPFSPLAAH---LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSR 132
Query: 370 RTLHSLYLASSGVIRWI 320
R ++ V+RW+
Sbjct: 133 RRARE----AASVVRWL 145
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 176 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 42
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 377 RDRPQERAVPGDARRAHAP--VPGPAHQCERLGAARHLHQQDHGLHQV-RLRQPLHDHRR 547
++R ++R P D+RR H P PG + + A + L + V R R P+ + +R
Sbjct: 375 KERERDRKHPADSRREHTPPRTPGDRRRSSSVRAEKPLRRPSPRRDAVHRHRSPVKEIKR 434
Query: 548 QEI 556
+ I
Sbjct: 435 EYI 437
>03_05_0145 + 21254448-21255488
Length = 346
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 362 QGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHL 484
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 368 AARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQD 496
AA R P A A AP P P+HQ ++ +RH D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191
>01_05_0610 - 23636097-23638958
Length = 953
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 435 YPDPLINVNDSVQLDISTNKIMDFIKFDSGNLC 533
+P+ + N+ V +D+S N ++ I F+ NLC
Sbjct: 283 FPNEIGNMTSIVDIDLSGNNLVGMIPFNLKNLC 315
>12_01_1046 -
10756062-10756326,10757618-10757782,10757901-10758206,
10758279-10758377,10760555-10760670,10760756-10760848,
10760946-10761107,10761784-10762170
Length = 530
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 483 RCRAAPSRSH**AGPGTGACARRASPGTARSWGRSRRAAPCTAC 352
R RAAP + + G GA ASP A WGRS A+ C
Sbjct: 40 RARAAPRLAVSASSAGAGA----ASPSPAAGWGRSDAASSLERC 79
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 499 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 499 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 350
M L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 426 TLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMIT 542
T R PD + + LD+S N + I GNL MIT
Sbjct: 123 TGRMPDEISELQRLTMLDLSYNNLTGHIPASVGNLTMIT 161
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 344 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGA--ARHLHQQDHGLHQVR 517
S A AA++ RP A AR A AP P PA +C R + + + ++ L Q R
Sbjct: 58 SSASAAAAAAQQARPNSMAER--ARLARAPQPEPALKCPRCDSTNTKFCYYNNYSLSQPR 115
>02_04_0582 - 24076614-24076643,24076961-24077440
Length = 169
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = -2
Query: 501 P*SCWWRCRAAPSRSH**AGPGTGACARRASPGTARSWGRSRRAAPCTACT 349
P C W R RS AG G GA A A P R G+ +AP + T
Sbjct: 68 PVECRWSGRV---RSFAGAGEGAGAAAVPACPAPRRGGGKKPSSAPSPSST 115
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 438 PDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMI 539
P + N+ LD+STN+I FI GNL +I
Sbjct: 248 PTTIGNLTSLKSLDLSTNEITGFIPESIGNLSLI 281
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 359 VQGAARRDRPQERAVPGDARRAHAPVPG 442
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>08_01_0915 + 9019499-9020971
Length = 490
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 393 SVPYL-VTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNL 530
S+ Y+ ++H+ T + P+ L N++ LD+S N + + GNL
Sbjct: 426 SINYIYISHNRITGQIPESLGNISQLSSLDLSNNLLYGSVPVSLGNL 472
>06_02_0262 + 13563082-13563633
Length = 183
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = -2
Query: 486 WRCRAAPSRSH**AGPGTGACARRASPGTARSWGRSRR--AAPC 361
WRC R AG G G A A WG RR APC
Sbjct: 70 WRCNVGGGRGG--AGSGDGVHASAVGVRGAWQWGGGRREAGAPC 111
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 285 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 389
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 435 YPDPLINVNDSVQLDISTNKIMDFIKFDSGNL 530
YP+ + +ND L++S N +D++ GNL
Sbjct: 659 YPETISTLNDLEYLNLSRNSRIDYLPRSLGNL 690
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 344 SQVQAVQGAARRDRPQERAVPGDARRA---HAPVPGPAHQCERLGAARHLHQQDHG 502
++ A G A R RP P A A H P P + +R RH H HG
Sbjct: 53 TETPAADGDAARKRPSAGDAPAPAPLADKRHRPNPPSSGSRDRDRHHRHGHSHSHG 108
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 190 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 62
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 353 QAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLG 469
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,862
Number of Sequences: 37544
Number of extensions: 378497
Number of successful extensions: 1472
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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