Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M02
         (565 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   324   5e-89
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   324   5e-89
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   324   5e-89
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   318   2e-87
AY061207-1|AAL28755.1|  707|Drosophila melanogaster LD15658p pro...    29   4.3  
AE014134-3600|EAA46022.2|  714|Drosophila melanogaster CG17490-P...    29   4.3  
AE013599-3492|ABI31111.1|  945|Drosophila melanogaster CG3682-PC...    28   7.6  
AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB...    28   7.6  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  324 bits (796), Expect = 5e-89
 Identities = 146/185 (78%), Positives = 165/185 (89%)
 Frame = +3

Query: 6   RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
           +KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 6   KKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65

Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
            QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCK
Sbjct: 66  MQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCK 125

Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
           V++   G K VP+LVTHDGRT+RYPDPLI+ NDSVQ+DI++ KI D+IKFDSGNLCMITG
Sbjct: 126 VKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185

Query: 546 GRKSG 560
           GR  G
Sbjct: 186 GRNLG 190


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  324 bits (796), Expect = 5e-89
 Identities = 146/185 (78%), Positives = 165/185 (89%)
 Frame = +3

Query: 6   RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
           +KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 6   KKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65

Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
            QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCK
Sbjct: 66  MQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCK 125

Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
           V++   G K VP+LVTHDGRT+RYPDPLI+ NDSVQ+DI++ KI D+IKFDSGNLCMITG
Sbjct: 126 VKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185

Query: 546 GRKSG 560
           GR  G
Sbjct: 186 GRNLG 190


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  324 bits (796), Expect = 5e-89
 Identities = 146/185 (78%), Positives = 165/185 (89%)
 Frame = +3

Query: 6   RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
           +KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 6   KKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65

Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
            QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCK
Sbjct: 66  MQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCK 125

Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
           V++   G K VP+LVTHDGRT+RYPDPLI+ NDSVQ+DI++ KI D+IKFDSGNLCMITG
Sbjct: 126 VKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185

Query: 546 GRKSG 560
           GR  G
Sbjct: 186 GRNLG 190


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  318 bits (782), Expect = 2e-87
 Identities = 144/185 (77%), Positives = 163/185 (88%)
 Frame = +3

Query: 6   RKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
           +KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G EV KIV
Sbjct: 6   KKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVTKIV 65

Query: 186 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 365
            QRL+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCK
Sbjct: 66  MQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCK 125

Query: 366 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 545
           V++   G K VP+LVTHDGRT+RYPDPLI+ NDSVQ+DI++ KI D+IKFDSGNLCMITG
Sbjct: 126 VKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185

Query: 546 GRKSG 560
           GR  G
Sbjct: 186 GRNLG 190


>AY061207-1|AAL28755.1|  707|Drosophila melanogaster LD15658p
           protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/102 (22%), Positives = 43/102 (42%)
 Frame = -3

Query: 365 LAQLVLGFFRCDTVDSEPSFHIIY*TE*LICFLNGYNVHKSRRVRGVSPHFPVHFDETLL 186
           L + V G + C  +D +     +     L C   G +    + +R  +P+F       L 
Sbjct: 328 LTKPVSGIYACCWIDQKEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQ 387

Query: 185 HNLKHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAA 60
           HN + L   ++  + + Q+ +      QL+   +  RRV+AA
Sbjct: 388 HNAEALQEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAA 429


>AE014134-3600|EAA46022.2|  714|Drosophila melanogaster CG17490-PB,
           isoform B protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/102 (22%), Positives = 43/102 (42%)
 Frame = -3

Query: 365 LAQLVLGFFRCDTVDSEPSFHIIY*TE*LICFLNGYNVHKSRRVRGVSPHFPVHFDETLL 186
           L + V G + C  +D +     +     L C   G +    + +R  +P+F       L 
Sbjct: 335 LTKPVSGIYACCWIDQKEELFCLSDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQ 394

Query: 185 HNLKHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAA 60
           HN + L   ++  + + Q+ +      QL+   +  RRV+AA
Sbjct: 395 HNAEALQEYKKHPDSLRQKLYREYKQQQLISMSKNIRRVNAA 436


>AE013599-3492|ABI31111.1|  945|Drosophila melanogaster CG3682-PC,
           isoform C protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 362 QGAARRDRPQERAVPGDARRAHAPVPGPAH 451
           +G+ RR   Q+R  PG       P P PAH
Sbjct: 581 RGSPRRKDAQDRTTPGTEPHTTNPNPAPAH 610


>AE013599-1564|AAM68647.1|  737|Drosophila melanogaster CG8772-PB,
           isoform B protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 36  KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK---YALTGNEVLKIVKQRLIKV 206
           ++W L +     AP P  G +   E       +R ++     ++TG E++++VKQ   KV
Sbjct: 4   RSWNLLQYATEKAPIPLDG-YTAEEAAEFKDSIRQKIVDDLKSMTGEELIELVKQNAAKV 62

Query: 207 -DGKVRTDPTYP 239
            + KV   PT P
Sbjct: 63  EEEKVEIPPTEP 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,101,534
Number of Sequences: 53049
Number of extensions: 611723
Number of successful extensions: 2158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)