Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M02
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    26   0.23 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   2.1  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.6  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 344 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLR 523
           SQ +      RR+   E A PG+ R  + P P P H   RL     L  +      V + 
Sbjct: 106 SQPRPPHPRLRREAEPE-AEPGNNRPVYIPQPRPPH--PRLRREAELEAEPGNNRPVYIS 162

Query: 524 QPLHDHRR 547
           QP   H R
Sbjct: 163 QPRPPHPR 170



 Score = 25.8 bits (54), Expect = 0.30
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRR 547
           R   +  A PG+ R  + P P P H   RL     L  +      V + QP   H R
Sbjct: 60  RREAEPEAEPGNNRPVYIPQPRPPH--PRLRREAELEAEPGNNRPVYISQPRPPHPR 114



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +2

Query: 344 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLR 523
           SQ +      RR+   E A PG+ R  + P P P H   R  A       ++    +   
Sbjct: 162 SQPRPPHPRLRREAEPE-AEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQP 220

Query: 524 QPLHDHRRQE 553
           +P H   R+E
Sbjct: 221 RPPHPRLRRE 230



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 374 RRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           RR+   E A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 32  RREAKPE-AEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 90



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAH 451
           R   +  A PG+ R  + P P P H
Sbjct: 228 RREAEPEAEPGNNRPVYIPQPRPPH 252



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 374 RRDRPQERAVPGDARRAHAPVPGPAH 451
           RR+   E A PG+ R  + P P P H
Sbjct: 256 RREAKPE-AKPGNNRPVYIPQPRPPH 280


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           R   + +A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 61  RREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRRE 119



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAH 451
           R R +  A PG+ R  + P P P H
Sbjct: 115 RLRREPEAEPGNNRPVYIPQPRPPH 139



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAH 451
           R R +  A PG+ R  + P P P H
Sbjct: 141 RLRREPEAEPGNNRPVYIPQPRPPH 165



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 374 RRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           RR+   E A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 33  RREAKPE-AEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRRE 91


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 438 PDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRKSGS 563
           PD L ++     LD+  N+I +F      NL  +TG R  G+
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGN 488


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           R   +  A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 33  RREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 91



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRR 547
           R   +  A PG+ R  + P P P H   RL        +      V + QP   H R
Sbjct: 89  RREAEPEAEPGNNRPVYIPQPRPPH--PRLRREAEPEAEPGNNRPVYIPQPRPPHPR 143


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 374 RRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           RR+   E A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 4   RREAKPE-AEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 62



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           R   +  A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 32  RREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 90



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 377 RDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRRQE 553
           R   +  A PG+ R  + P P P H   R  A       ++    +   +P H   R+E
Sbjct: 88  RREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 146



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +2

Query: 374 RRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDHRR 547
           RR+   E A PG+ R  + P P P H   RL        +      V + QP   H R
Sbjct: 144 RREAKPE-AEPGNNRPVYIPQPRPPH--PRLRREAEPEAEPGNNRPVYIPQPRPPHPR 198


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 141 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 242
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 443 PAHQCERLGAARHLHQQDHG 502
           P ++ +   A  + HQQDHG
Sbjct: 82  PYNRMDMRNATYYQHQQDHG 101


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 302
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,281
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)