Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_M01
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.3  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   9.2  

>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 89  PLLTHVSSDLRCRRSRPLTRDEVLTA 166
           PLLTH+  D +  + R   R E L A
Sbjct: 790 PLLTHILGDSKIEKGRKEIRSEALAA 815


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 80  ERQPLLTHVSSDLRCRRSRPLTRDEVLTACQE 175
           E QP    V   L+ + S+PLT  EVLT   E
Sbjct: 257 ETQPS-NQVDDSLKSKDSKPLTMSEVLTQLPE 287


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 179 SPLGKLLTLHRASAV*IFYILSLN*RES 96
           +P+   LTL  A AV I YI+ +N R++
Sbjct: 280 APVAVALTLWSACAVLIIYIMKVNGRQA 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,686
Number of Sequences: 5004
Number of extensions: 30338
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)