Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L24
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 29 0.43
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 1.0
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.8
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 3.1
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 26 4.0
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 26 4.0
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 26 5.3
SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.1
SPAC22E12.08 |rrn10||RNA polymerase I upstream activation factor... 25 7.1
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 9.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 9.3
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.5 bits (63), Expect = 0.43
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 370 INLETDTILAKYPIPSEFVLQNSLITNLIVDSRDARCRDLHVYIADAW 513
+N++ +++L K P PSE + TN+ + + R R L V+++ W
Sbjct: 347 LNIDPESLLPKLPTPSELRPFPTRCTNVFIGHK-GRVRCLSVHVSGNW 393
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 124 STPRWKKGVPATLSTVPTVYQ---TESPPL 204
STP K +P+T+ T+P+ Y + PPL
Sbjct: 292 STPFMKPSIPSTIPTIPSAYSASVSSQPPL 321
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.5 bits (58), Expect = 1.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 302 THITPQWSITIRNIDVNPVQLSALC 228
TH+T + +T+ + NP+ + C
Sbjct: 336 THVTGNYDLTVNTVQANPINMQIKC 360
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 298 WVIDSGQVEAFETPRQLCPPTLFAINLETDTILAKYPIPSEFVLQNSLITNLIVDS 465
W DSG V+ + L PP L ++ E D + + + +V + S +T L+ DS
Sbjct: 137 WRADSGVVQVIDNIIDLPPPALEILSSEKDFSIF-HRLSVAWVGEYSSVTMLVPDS 191
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 226 WHNADNCTGFTSIFRMVIDHCGVMWVI 306
W + +N T + F +++ CGV+W +
Sbjct: 248 WSHIENYTDWPDGFAILMSFCGVIWTM 274
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 142 KGVPATLSTVPTVYQTESPPLAPYPNWDWHNADNCTGFTS 261
KG ++S++PTV+Q L PY N T FTS
Sbjct: 330 KGSSQSISSLPTVHQNMIATLRPYAG----TPGNITAFTS 365
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +1
Query: 145 GVPATLSTVPTVYQT---ESPPLAPYPNWDWH 231
G+PA+ T+ T PL Y NW WH
Sbjct: 84 GIPASAFTLVLYLDTVIRRDHPLKRYENWIWH 115
>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 86
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 25 TEQQRNQA--IANGEFNQTNVIPLGIERWGDRLFISTPRWKKGVPATLSTVPTVY 183
T QQ+N + I + NQ IP+ ++ F+S PR + +S+ P ++
Sbjct: 11 TNQQQNSSPVIKEVDLNQNTPIPVVWQKTKKPPFVSFPRHEPSETIVISSKPRLF 65
>SPAC22E12.08 |rrn10||RNA polymerase I upstream activation factor
complex subunit Rrn10|Schizosaccharomyces pombe|chr
1|||Manual
Length = 97
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 68 TKPTLYHLA*NDGEIVY 118
T+PTLY+L DGE+ Y
Sbjct: 6 TRPTLYNLVNADGELSY 22
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 32 NNEIKQSQMENSTKPTLYHLA 94
N+ + SQ N T PT+ H+A
Sbjct: 148 NDHVNMSQSSNDTFPTVMHIA 168
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 539 FLKTIKPKRQASAIYTCKSLQRASLES 459
F++T PK QAS K++Q+A + S
Sbjct: 109 FIRTTNPKHQASVQEFWKTIQKAGMIS 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,187
Number of Sequences: 5004
Number of extensions: 64310
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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