Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L24
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88169-9|AAB42230.1| 417|Caenorhabditis elegans Phosphoglycerat... 29 2.8
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 3.7
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 3.7
Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z93388-2|CAB07659.1| 369|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 28 6.5
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 28 6.5
U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical pr... 27 8.6
U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U88169-9|AAB42230.1| 417|Caenorhabditis elegans Phosphoglycerate
kinase protein 1 protein.
Length = 417
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 8 VTINIPLNNNEIKQSQMENSTKPTLYHLA*NDGEIVYLLVH---RDGKKE 148
V N+PL + +I +Q + PT+ H N + V L+ H DG+++
Sbjct: 23 VDFNVPLKDGKITNNQRIAAAVPTIQHALSNGAKSVVLMSHLGRPDGRRQ 72
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 485 SLQRASLESTIRFVIREF*STNSLGMGYFANMVSVSKLIANKVGGQS*RGVSKASTCPES 306
++QR L I ++ + S + + +L+ANK+G G + + C
Sbjct: 1643 TVQRGQLPYLIYSILDQSNSLQIKQETIYDTFTLLLRLMANKIGAAITEGGALPACCQHL 1702
Query: 305 ITHITPQWSITIRNIDVNPVQLSALCQSQLGY--GASGGDSVWYTVGTVDNVAGTPF 141
++HI P + + +++ + + + +G + V+++ + D+ TP+
Sbjct: 1703 MSHINPHVMVYMERFPDKALEMMSTMEQLIPMVSNLNGVERVFHSYDSDDSGCDTPY 1759
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -2
Query: 485 SLQRASLESTIRFVIREF*STNSLGMGYFANMVSVSKLIANKVGGQS*RGVSKASTCPES 306
++QR L I ++ + S + + +L+ANK+G G + + C
Sbjct: 1579 TVQRGQLPYLIYSILDQSNSLQIKQETIYDTFTLLLRLMANKIGAAITEGGALPACCQHL 1638
Query: 305 ITHITPQWSITIRNIDVNPVQLSALCQSQLGY--GASGGDSVWYTVGTVDNVAGTPF 141
++HI P + + +++ + + + +G + V+++ + D+ TP+
Sbjct: 1639 MSHINPHVMVYMERFPDKALEMMSTMEQLIPMVSNLNGVERVFHSYDSDDSGCDTPY 1695
>Z99942-8|CAC70091.2| 439|Caenorhabditis elegans Hypothetical
protein H13N06.3b protein.
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 31 QQRNQAIANGEFNQTNVIPLGIERWGDRLFISTPRWKKGVPATLS 165
+Q ++ + GEF Q ++ G++R DRL + K VP LS
Sbjct: 260 EQLDEILHEGEFVQFALVGSGVQRKVDRLTLGVQTVFKQVPEDLS 304
>Z99942-2|CAB17072.1| 468|Caenorhabditis elegans Hypothetical
protein H13N06.3a protein.
Length = 468
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 31 QQRNQAIANGEFNQTNVIPLGIERWGDRLFISTPRWKKGVPATLS 165
+Q ++ + GEF Q ++ G++R DRL + K VP LS
Sbjct: 289 EQLDEILHEGEFVQFALVGSGVQRKVDRLTLGVQTVFKQVPEDLS 333
>Z93388-2|CAB07659.1| 369|Caenorhabditis elegans Hypothetical
protein T10C6.2 protein.
Length = 369
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 349 CPPTLFAINLETDTILAKYPIPSEFV 426
C PTLFA + T T +++ IP FV
Sbjct: 341 CKPTLFASQMVTHTDVSRADIPPRFV 366
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 298 WVIDSGQVEAFETPRQLCPPTL 363
W++ GQ E FET + CP L
Sbjct: 214 WIVPEGQEEDFETAMERCPSHL 235
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 298 WVIDSGQVEAFETPRQLCPPTL 363
W++ GQ E FET + CP L
Sbjct: 296 WIVPEGQEEDFETAMERCPSHL 317
>U39849-6|AAM81124.1| 642|Caenorhabditis elegans Hypothetical
protein C06A8.1b protein.
Length = 642
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 130 PRWKKGVPATLSTVPTVYQTESPPLAPYPNWDWH------NADNCTGFTSIFRMVIDHCG 291
PR+ GVP L V + + S + + WH N D T +SI ++D+CG
Sbjct: 59 PRFVNGVPNFLERVERLSEGGSV----FVDMTWHMGSDPANVDKVTSSSSIAASMLDYCG 114
Query: 292 V 294
V
Sbjct: 115 V 115
>U39849-5|AAA81048.2| 663|Caenorhabditis elegans Hypothetical
protein C06A8.1a protein.
Length = 663
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 130 PRWKKGVPATLSTVPTVYQTESPPLAPYPNWDWH------NADNCTGFTSIFRMVIDHCG 291
PR+ GVP L V + + S + + WH N D T +SI ++D+CG
Sbjct: 80 PRFVNGVPNFLERVERLSEGGSV----FVDMTWHMGSDPANVDKVTSSSSIAASMLDYCG 135
Query: 292 V 294
V
Sbjct: 136 V 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,138
Number of Sequences: 27780
Number of extensions: 356087
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -