Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L23
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 28 0.77
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 2.4
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 2.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 26 3.1
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 26 3.1
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.1
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 26 4.1
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 25 5.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 5.5
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 5.5
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 5.5
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 25 7.2
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 25 9.5
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 9.5
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 25 9.5
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 468 TNMDNYFVHRCNIQELIRGTVCE 536
+N + Y + N+QELIR T+CE
Sbjct: 181 SNPNRYRFYETNMQELIRKTICE 203
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 478 SILVSRTENTNFGIWLTKTHTSSPFIT 398
S + + NT G WL+ H PF+T
Sbjct: 438 SYIFEKFTNTILGFWLSTQHHKHPFLT 464
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -2
Query: 326 VNIPAEYSVLGHVSE*HHLSWAVDSVRAALRVRASCTFHLEFFSEILPPALQDLRIDGKL 147
V++P E+ +L ++ + HL + + +V R+ + I+ +D +I K
Sbjct: 332 VHVPGEHPILYYIHKRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKR 391
Query: 146 LFGNQRMVVSSSFV 105
+ +V SSFV
Sbjct: 392 YYRQHCALVDSSFV 405
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 381 LYISDLVINGDDV----WVLVNQIPKFVFSVLDTNMDNYFVHRCNIQELIR 521
+YISD+ +N DD+ L QI K D + DN H+ +++EL R
Sbjct: 401 MYISDIYVNEDDIVCFQGSLWTQIDKNALDYND-SADNIDEHKDDLKELPR 450
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 35 CCWKRYQLERWPVQYSIIATR 97
C + Y +WP+ YS+IA+R
Sbjct: 496 CVAEDYDRSKWPMLYSLIASR 516
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 455 EYEFWYLVDQNPYVVPVYNQIRYIEELLMILS 360
+Y+F ++P+V+ + N++ E LL ILS
Sbjct: 250 QYDFMIATPKHPFVLSLINELCKSEVLLKILS 281
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 55 IGKMACSV*HYRHPITVTNEEL 120
IGK+AC+ YR+ +T T E++
Sbjct: 30 IGKIACNENKYRYEMTSTEEDI 51
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 417 VWVLVNQIPKFVFSVLDTNMDNYFVHRC 500
+W L++ I +F + TN D YF+ +C
Sbjct: 58 IWTLLSAIVRFYCAYHITNPDVYFLCQC 85
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 175 FKICVSTENSCLETR 131
FK CVS EN C+ R
Sbjct: 26 FKTCVSNENGCINCR 40
>SPAC6G9.12 |cfr1||Chs five related protein
Cfr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 82 AILNRPSFQLITFPATVKLSDASS 11
AIL PSF +I FP+ + +DA++
Sbjct: 19 AILLTPSFHIIEFPSVLLPNDATA 42
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 5.5
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +3
Query: 282 FANVAQDAILCWNINTPLIPSNVAVVAQDHQKLLYISDLVINGDDVW-----VLVNQIPK 446
F QD IL + + V V QD + D+ ING + +N PK
Sbjct: 891 FFEYEQDEILNDVVGFMIEDEYVIVAVQDEEGTSLSLDVSINGLNFASCSFPAYLNVHPK 950
Query: 447 FVFSVLDTNMDNYFVH 494
+++LD+ + F+H
Sbjct: 951 QAYTILDSQTHSLFIH 966
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 194 EILPPALQDLRIDGKLLFGNQRMVV 120
E+L P L + GKL GN +++V
Sbjct: 65 EVLVPLTSSLYVPGKLNLGNSKLLV 89
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 243 GTHAIHGPTKVMLFANVAQDAILCWNINTPLIPSN 347
GT+ H PTK + +NV+ NI + L+ +N
Sbjct: 210 GTNFFHSPTKWITHSNVSNGYYTSRNIMSFLLSNN 244
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 270 KVMLFANVAQDAILCWNINTPLIPSNVAVVAQD 368
+ +L + A+ LCWN P +P N+A A+D
Sbjct: 175 QAVLKGHTAEGFGLCWN---PNLPGNLATGAED 204
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 470 SIEDGEYEFWYLVD 429
SIE G+Y F YL+D
Sbjct: 45 SIESGDYTFHYLID 58
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 123 YHPLVSKQEFSVDTQILKSGGENFAKEFKV---EGTRGPNTQSGTHAIHGPTKVMLFANV 293
Y P E + T++ KS + KEF+V G R +G I G TK FA +
Sbjct: 118 YGPATVSMEPEIKTEVFKSFFNSMPKEFEVWMSHGDRLSALPNGYETI-GRTKNSPFAVI 176
Query: 294 A 296
A
Sbjct: 177 A 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,307
Number of Sequences: 5004
Number of extensions: 45325
Number of successful extensions: 146
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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