Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L23
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0105 - 5345149-5347833 33 0.15
02_02_0343 + 9163976-9165220 30 1.4
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 29 1.8
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 29 3.2
09_06_0110 + 20923523-20924065 27 7.3
06_03_1134 + 27892208-27892302,27892489-27892585,27893031-278930... 27 7.3
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 27 7.3
05_03_0401 - 13529818-13529933,13530145-13530394 27 9.7
03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632... 27 9.7
02_05_0404 - 28700377-28701741,28701842-28702318 27 9.7
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 27 9.7
>10_02_0105 - 5345149-5347833
Length = 894
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 211 WKVQEALTRKAARTLSTAQLR*CYSLTWPKTLYS 312
WK QE T+++ +TL + C +LTW +T+ S
Sbjct: 654 WKAQEIRTKRSLQTLYVFSIMQCDALTWKRTIRS 687
>02_02_0343 + 9163976-9165220
Length = 414
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +3
Query: 267 TKVMLFANVAQDAILCWNINTPLIPSNVAVVAQDHQKLLYISDLVINGDD 416
TKV+ ++ +A+ NI+ L+PS +++A + KL++ SDL + D
Sbjct: 273 TKVLSAGSLQLEALKVDNISGVLVPSICSLLAANLHKLIFKSDLQMESFD 322
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 261 GPTKVMLFANVAQDAILCWNINTPLIPSNVAVVAQDHQKLLY 386
G + +LF + D + C N ++ + + Q +QK+LY
Sbjct: 603 GDLQYILFFHKLMDTVECGNTEDTVLAKAITIATQSYQKMLY 644
>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = -2
Query: 200 FSEILPPALQDLRIDGKLLF----GNQRMVVSSSFVTV 99
FS+I+ P +D +D LLF GNQ +V+ S+ VT+
Sbjct: 973 FSDIVSPKTEDRVLDCALLFNKLKGNQNIVILSNSVTL 1010
>09_06_0110 + 20923523-20924065
Length = 180
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 316 QQSIASWATLANSITLVGPWIACVPL 239
QQ A W T +S+ V P +CVP+
Sbjct: 113 QQEAAEWTTTTDSLYSVSPPPSCVPM 138
>06_03_1134 +
27892208-27892302,27892489-27892585,27893031-27893092,
27893198-27893409,27893487-27893566,27894208-27894328,
27894644-27894731,27894815-27894931,27895031-27895140,
27895334-27895482
Length = 376
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = -2
Query: 338 NQGSVNIPAEYSVLGHVSE*HHLSWAVDSVRAALRVRASCTFHLE 204
N VN+ +Y + + HH W +D A L S L+
Sbjct: 61 NSAKVNVKRDYREILQTQDTHHAVWTLDKTIAKLETELSAARTLQ 105
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 361 ATTATLEGIKGVLIFQQSIASWATLANSITLVGPWIACVPLCVLGPLVP 215
A+ A+ E G+L S+AS TLA+S + WI PL +L +P
Sbjct: 727 ASWASKEMYHGLLKSSHSVAS-QTLADSPVVKATWITRCPLLLLDTRMP 774
>05_03_0401 - 13529818-13529933,13530145-13530394
Length = 121
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 325 LIFQQSIASWATLANSITLVGPW 257
LI+ QS +ANSIT+V PW
Sbjct: 75 LIWPQSQKQGDRMANSITIVAPW 97
>03_06_0486 -
34261577-34261692,34261830-34262094,34263164-34263277,
34263371-34264795
Length = 639
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 384 RGASDDPERRRPRWKESREC 325
RGA DD R + W++ R+C
Sbjct: 334 RGADDDQRRWKCEWEQERDC 353
>02_05_0404 - 28700377-28701741,28701842-28702318
Length = 613
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 316 QQSIASWATLANSITLVGPWIACV 245
+Q+ ASW+ L + T G W CV
Sbjct: 203 EQTTASWSALLAAYTRAGRWAECV 226
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 27.1 bits (57), Expect = 9.7
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Frame = -2
Query: 521 SYQFLNVTPVYKIIIHISIEDGEYEFWYLVDQN--PYVVPVYNQI---RYIEELLMILSD 357
S +L VT + K+I ++ W++VD P +P Y ++ Y SD
Sbjct: 175 SRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWNGSYSFSERYTTSD 234
Query: 356 DGHVGR---NQGSVNIPAEYSVLGHV---SE*HHLSWAVDSVRAALRVRASCTF 213
+ R N+G VN+ AE V GH + W DS + L V + TF
Sbjct: 235 AVDIVRYAENRG-VNVMAEIDVPGHALSWGVGYPSLWPSDSCKEPLDVSNNFTF 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,674
Number of Sequences: 37544
Number of extensions: 298141
Number of successful extensions: 778
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -