Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L23
         (543 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S56138-1|AAA14245.1|  748|Homo sapiens choline acetyltransferase...    29   8.0  
BC130617-1|AAI30618.1|  630|Homo sapiens CHAT protein protein.         29   8.0  
BC130615-1|AAI30616.1|  630|Homo sapiens CHAT protein protein.         29   8.0  
AF305909-1|AAK08955.1|  630|Homo sapiens choline acetyltransfera...    29   8.0  
AF305908-1|AAK08954.1|  666|Homo sapiens choline acetyltransfera...    29   8.0  
AF305907-1|AAK08953.1|  748|Homo sapiens choline acetyltransfera...    29   8.0  
AF305906-3|AAK08952.1|  630|Homo sapiens choline acetyltransfera...    29   8.0  
AF305906-2|AAK08951.1|  666|Homo sapiens choline acetyltransfera...    29   8.0  
AF305906-1|AAK08950.1|  748|Homo sapiens choline acetyltransfera...    29   8.0  

>S56138-1|AAA14245.1|  748|Homo sapiens choline acetyltransferase
           protein.
          Length = 748

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702


>BC130617-1|AAI30618.1|  630|Homo sapiens CHAT protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584


>BC130615-1|AAI30616.1|  630|Homo sapiens CHAT protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584


>AF305909-1|AAK08955.1|  630|Homo sapiens choline acetyltransferase
           isoform R protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584


>AF305908-1|AAK08954.1|  666|Homo sapiens choline acetyltransferase
           isoform S protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 586 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 620


>AF305907-1|AAK08953.1|  748|Homo sapiens choline acetyltransferase
           isoform M protein.
          Length = 748

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702


>AF305906-3|AAK08952.1|  630|Homo sapiens choline acetyltransferase
           isoform R protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 550 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 584


>AF305906-2|AAK08951.1|  666|Homo sapiens choline acetyltransferase
           isoform S protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 586 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 620


>AF305906-1|AAK08950.1|  748|Homo sapiens choline acetyltransferase
           isoform M protein.
          Length = 748

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 CVLGPLVPSTLNSLAKFSPPLFKICVSTENSCLET 134
           C  GP+VP+   +     P     C+S+ +SC ET
Sbjct: 668 CCYGPVVPNGYGACYNPQPETILFCISSFHSCKET 702


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,074,236
Number of Sequences: 237096
Number of extensions: 1582176
Number of successful extensions: 7250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7250
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)