Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L21
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.76
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 28 0.76
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 3.1
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 4.1
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 4.1
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 5.4
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 7.1
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 9.4
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 9.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 9.4
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 9.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.76
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = -1
Query: 526 TSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSSLFSV* 347
+S A SSL +SS S+ S T P+S S ++ S SL +ST + + S+
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPTS-SSLTSSSATSSSLASSSTTSSSLASSSIT 135
Query: 346 NNDCSRCIVGFFTTVVESTWKSFFIVSLALKGTCQ*PWKNITLK--SAAAAFGSMVSSEI 173
++ + + + ST S S T P + T S+ AA S SS +
Sbjct: 136 SSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSL 195
Score = 24.6 bits (51), Expect = 9.4
Identities = 28/119 (23%), Positives = 47/119 (39%)
Frame = -1
Query: 535 SKFTSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSSLF 356
S TS SS TSS S+ S T P+S + + + S S++ A SSL
Sbjct: 142 SSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLN 201
Query: 355 SV*NNDCSRCIVGFFTTVVESTWKSFFIVSLALKGTCQ*PWKNITLKSAAAAFGSMVSS 179
S + +T ++ S + S +L T + ++ S ++ + SS
Sbjct: 202 S--TTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSS 258
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 526 TSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPS 365
+S A S + S S FS+A+ D + S++S +I + LYGN+T PS
Sbjct: 321 SSTTADSKNSHSPYSKFSSAYP--DAENSNISKINISIAGNKELYGNATQSDPS 372
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 496 TSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSS 362
TSS S S++ S + PSS S + ++ KS S +S+ + SS
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSS 192
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -1
Query: 535 SKFTSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSS 362
S +S SSL+TSS+ S++ S T SS S T S S S++ + SS
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 296 LYNGSEEANYASTAIVI-LYRK*RARSTISRIAIQGV 403
LY G EEAN+ + + I L+R+ RA + + GV
Sbjct: 1448 LYEGDEEANFFNNILHIQLHRRKRAMKRLVNVCAIGV 1484
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 523 SLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSS 362
S S+ NT+S ++ S T + SS S +TT+ SDS +S+ +S
Sbjct: 64 STHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQTISAS 117
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 514 AGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTNRAPSSLFSV*NNDC 335
AG SL +S M SK D PS R + +S+Y + + SS FS +++
Sbjct: 297 AGGSLRSSKMDNRR---SKYADTPSPRRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEY 353
Query: 334 SR 329
S+
Sbjct: 354 SK 355
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 532 KFTSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTT 416
K S P+ N + PFS+ + KPSS+S T
Sbjct: 599 KLQSKPSSVVPNRITTDPFSSQTKEATSKPSSISPNKAT 637
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 364 SSEHD*SNCHTRSLISVWWSSFLTNSKVYR 453
+S D +C R L S+WWS ++ YR
Sbjct: 52 NSLQDKWDCWKRDLWSIWWSLSRKATRFYR 81
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 535 SKFTSLPAGSSLNTSSMSPFSAAFSKTDDKPSSLSGRMTTIRKSDSLYGNSTN 377
S+ + P+ S +T + S F+A FS D+PSS + + + NST+
Sbjct: 280 SRQETTPSDSRPSTLT-SLFNAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTS 331
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -3
Query: 326 HSWLLHYRCRVHMEIFL----YSLTCVERHVPVTLEEYNIEERGSCI 198
H++LL VH+ L + + P+TL E+ I E G C+
Sbjct: 388 HAYLLDLGLAVHLADLLSKSGHLRDYITEEYPITLREHLILEYGQCV 434
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 399 ESDFRMVVILPDKLEGLSSVLEKAAEKGLIDDV 497
+S M LPD EG SS +KG ID++
Sbjct: 1166 QSQSSMHTALPDVTEGTSSDEHTTIQKGRIDNL 1198
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 514 AGSSLNTSSMSPFSAAFSKTDDKPSSLS 431
+GSS +TSS++ S A+S + SS S
Sbjct: 573 SGSSTSTSSVAVTSTAYSSSSSSSSSSS 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,261
Number of Sequences: 5004
Number of extensions: 47539
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -