Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L21
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.49 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.49 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 340 RYSIQKIKSSEHD*SNCHTRSLISVWWSS 426
           RY I   + SEH+ +N +   ++  W++S
Sbjct: 399 RYEILNFRKSEHNGTNGYQYQVVGKWFNS 427


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 340 RYSIQKIKSSEHD*SNCHTRSLISVWWSS 426
           RY I   + SEH+ +N +   ++  W++S
Sbjct: 489 RYEILNFRKSEHNGTNGYQYQVVGKWFNS 517


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 28  NILWMRNSRALPVSTKARL 84
           +I+W R++R LP++ K ++
Sbjct: 521 SIVWERDTRVLPINRKQKV 539


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 527 YVSTSR-FQPKHIVNESFLCCFF*NRR 450
           Y S  R FQ KH  +++   C F NRR
Sbjct: 18  YYSLKRHFQDKHEQSDTLYVCEFCNRR 44


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 6   RKIYVGNKYTLDEKFTSS 59
           +K+Y  N Y +DE  +SS
Sbjct: 940 KKVYKQNDYIVDESSSSS 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,003
Number of Sequences: 438
Number of extensions: 3406
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)