Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L20
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    81   6e-17
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    79   3e-16
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    27   1.5  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    27   1.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   2.6  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    25   4.5  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   4.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   7.8  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 81.0 bits (191), Expect = 6e-17
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = +1

Query: 208 SVDKEELVQRAKLAEQAERYDDLAAAMKEVTETGVELRNEERNLLSVAY*NVVGARRSSW 387
           +  +E+ V  AKLAEQAERY+ +   MK V  T  EL  EERNLLSVAY NV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 388 RVISS 402
           R++SS
Sbjct: 63  RIVSS 67


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 78.6 bits (185), Expect = 3e-16
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +1

Query: 205 MSVDKEELVQRAKLAEQAERYDDLAAAMKEVTETGVELRNEERNLLSVAY*NVVGARRSS 384
           MS  +E  V  AKLAEQAERY+++   MK+V  +  +L  EERNLLSVAY N++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 385 WRVISS 402
           WR+ISS
Sbjct: 61  WRIISS 66


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 357 LISNGKKVSFFVPELDAGFRHFLHRGRQVIIS 262
           LI NGKKV+ FVP    G  +F+    +V++S
Sbjct: 74  LIKNGKKVTAFVPH--DGCLNFVDENDEVLLS 103


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 357 LISNGKKVSFFVPELDAGFRHFLHRGRQVIIS 262
           LI NGKKV+ FVP    G  +F+    +V++S
Sbjct: 74  LIKNGKKVTAFVPH--DGCLNFVDENDEVLLS 103


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 180 SLMPLLKLQVLEH*CKQNSVL*LTAPQNRVA--GSGKMAVVGRVKR*LTSKLQNFFGFSP 7
           SL+PLLKL  L+H    +S   L +  N  +   S K      +K  LTS L+ F+ ++ 
Sbjct: 189 SLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQK-ASSLK--LTSSLKKFYSWTS 245

Query: 6   S 4
           S
Sbjct: 246 S 246


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = +2

Query: 173 ISEINIFHRPRCPSIRRN*YNAPSWLSRLNDMMTWXXXXXXXXXXASSSGTKKETFF 343
           I E+     P+C       +NAP W S L D               SS G   ET F
Sbjct: 89  IIELKGVELPKCLPKHARYHNAPKWRSSLMDSEILHNPSLANTHLDSSKGRYFETDF 145


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 363 HILISNGKKVSFFVPELDAGFRHFLHRGRQVIISFSLLS 247
           H+L++ G +V+ F  + D G     HR  ++ +  S+ S
Sbjct: 187 HLLLTTGHRVNGFTLDTDIGEFILTHRNMKMPLQHSIYS 225


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 285 DEGSDGNRRRAQERRKKPSFRCLLKCGRRPTVIMAS 392
           DEG     ++ Q ++KKPS R   + GR+P+ + +S
Sbjct: 108 DEGKAIAPKKKQTKQKKPSVRG--RRGRKPSSLSSS 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,132
Number of Sequences: 5004
Number of extensions: 28517
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)