Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_L20
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 79 1e-15
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 79 2e-15
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 77 5e-15
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 76 9e-15
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 76 1e-14
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 69 1e-12
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 53 8e-08
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 43 1e-04
02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891 29 1.8
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322... 28 2.4
12_02_0329 + 17585046-17585561 27 4.3
03_05_0521 + 25160245-25160883 27 4.3
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 27 5.6
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 27 7.5
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591... 27 7.5
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 27 7.5
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 26 9.9
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 79.0 bits (186), Expect = 1e-15
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +1
Query: 196 SSTMSVDKEELVQRAKLAEQAERYDDLAAAMKEVTET--GVELRNEERNLLSVAY*NVVG 369
S+ + +EE V AKLAEQAERY+++ M++V +T EL EERNLLSVAY NV+G
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 61
Query: 370 ARRSSWRVISS 402
ARR+SWR+ISS
Sbjct: 62 ARRASWRIISS 72
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 78.6 bits (185), Expect = 2e-15
Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = +1
Query: 196 SSTMSVDKEELVQRAKLAEQAERYDDLAAAMKEVTET--GVELRNEERNLLSVAY*NVVG 369
S + +EE V AKLAEQAERY+++ M++V +T EL EERNLLSVAY NV+G
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 279
Query: 370 ARRSSWRVISS 402
ARR+SWR+ISS
Sbjct: 280 ARRASWRIISS 290
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 77.0 bits (181), Expect = 5e-15
Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +1
Query: 199 STMSVDKEELVQRAKLAEQAERYDDLAAAMKEVTETGV--ELRNEERNLLSVAY*NVVGA 372
S +EE V AKLAEQAERY+++ M++V +T EL EERNLLSVAY NV+GA
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERNLLSVAYKNVIGA 61
Query: 373 RRSSWRVISS 402
RR+SWR+ISS
Sbjct: 62 RRASWRIISS 71
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 76.2 bits (179), Expect = 9e-15
Identities = 39/66 (59%), Positives = 51/66 (77%), Gaps = 2/66 (3%)
Frame = +1
Query: 211 VDKEELVQRAKLAEQAERYDDLAAAMKEVTETG--VELRNEERNLLSVAY*NVVGARRSS 384
+ +EE V AKLAEQAERY+++ M++V +T EL EERNLLSVAY NV+GARR+S
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRAS 60
Query: 385 WRVISS 402
WR++SS
Sbjct: 61 WRIVSS 66
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 75.8 bits (178), Expect = 1e-14
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 5/67 (7%)
Frame = +1
Query: 217 KEELVQRAKLAEQAERYDDLAAAMKEVTET-----GVELRNEERNLLSVAY*NVVGARRS 381
+EE+V AKLAEQAERY+++ M++V G EL EERNLLSVAY NV+GARR+
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVIGARRA 69
Query: 382 SWRVISS 402
SWR++SS
Sbjct: 70 SWRIVSS 76
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 69.3 bits (162), Expect = 1e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +1
Query: 214 DKEELVQRAKLAEQAERYDDLAAAMKEVTETGVELRNEERNLLSVAY*NVVGARRSSWRV 393
++E++V+ AKLAEQAERYDD+ MK + V++ EER L SV + +GARR+SWR+
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSVGFKKTIGARRASWRI 62
Query: 394 ISS 402
+ S
Sbjct: 63 LES 65
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 53.2 bits (122), Expect = 8e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1
Query: 307 GVELRNEERNLLSVAY*NVVGARRSSWRVISS 402
G EL EERNLLSVAY NV+GARR+SWR+ISS
Sbjct: 18 GEELTVEERNLLSVAYKNVIGARRASWRIISS 49
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 274 LAAAMKEVTETGVELRNEERNLLSVAY*NVVGARRSSWRVISS 402
+ AM V + L EERNLLSV Y N++GA+R++ R+I S
Sbjct: 1 MVEAMNSVAKLDEGLTKEERNLLSVGYKNLIGAKRAAMRIIGS 43
>02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891
Length = 414
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 131 CLH*CSNTCSFKRGISEINIFHRPRCPSIRR 223
C H C SFK G S +N ++ CP+ +R
Sbjct: 34 CRH-CKKQLSFKNGTSRLNRHYQDTCPARKR 63
>11_01_0419 +
3226224-3226756,3228010-3228169,3228256-3228435,
3228525-3228659,3229262-3229344,3229442-3229535,
3229649-3229735
Length = 423
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 276 GGRDEGSDGNRRRA-QERRKKPSFRCLLKCGRRPTVIM 386
G E +DG RRR+ Q RR++P R + G RP++ M
Sbjct: 91 GSAAEAADGGRRRSRQGRRRRPQRR--RRRGSRPSLFM 126
>12_02_0329 + 17585046-17585561
Length = 171
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 276 GGRDEGSDGNRRRAQERRKKPS 341
GG+ G DG RR +ERR++ S
Sbjct: 139 GGKGGGGDGRWRRGKERRREQS 160
>03_05_0521 + 25160245-25160883
Length = 212
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 279 GRDEGSDGNRRRAQERRKKP 338
GR G DG R R +ERR+ P
Sbjct: 99 GRGGGGDGGRSRGRERRRLP 118
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 196 MEDIDFTDAPFKTAGIRTLVQTKFRIIANRAAKSCRRFRQNGC 68
+ D+D +D P GIR L+ R + R KS R R C
Sbjct: 429 LRDLDISDNPIMDEGIRLLICFISRTL--RKEKSLSRLRAENC 469
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 357 LISNGKKVSFFVPELDAGFRHFLHRGRQVIIS 262
L+ NGKK++ FVP + G +F+ +V+I+
Sbjct: 73 LVKNGKKIAAFVP--NDGCLNFIEENDEVLIA 102
>03_05_0696 -
26856413-26856416,26857917-26858524,26859041-26859101,
26859181-26859557,26860314-26861156
Length = 630
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 339 KVSFFVPELDAGFRHFLHRGRQVIISFSLLSQLGA 235
K+ + E+D ++H+ H+ + V+ SF +++ GA
Sbjct: 274 KLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGA 308
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 357 LISNGKKVSFFVPELDAGFRHFLHRGRQVIIS 262
L+ NGKK++ FVP + G +F+ +V+I+
Sbjct: 73 LVKNGKKIAAFVP--NDGCLNFIEENDEVLIA 102
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 357 LISNGKKVSFFVPELDAGFRHFLHRGRQVIIS 262
L+ NGKK++ FVP + G +F+ +V+I+
Sbjct: 243 LVKNGKKIAAFVP--NDGCLNFIEENDEVLIA 272
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = -2
Query: 265 IVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDAPFKTAGIRTLVQTKFR 122
+V P+W+V + RT+ +++ + T+ P T+G+ TLVQ KFR
Sbjct: 177 VVASGGPSWQVEVGRKDSRTA-SLQGAN-TNLPAPTSGVATLVQ-KFR 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,871
Number of Sequences: 37544
Number of extensions: 200973
Number of successful extensions: 625
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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