Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L20
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   3.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.3  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 169 GHQ*NQYLPSSTMSVDKEELVQRAKLAEQAERYDDLAAA 285
           GH  N +  S    V KEEL    KL +  E  D L ++
Sbjct: 24  GHDGNLWAKSEGFEVSKEEL---TKLVQGFEEQDILTSS 59


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 274 GHHIVQPAQPTWRVVLV 224
           GHH++Q   P+  VV++
Sbjct: 200 GHHLIQTFAPSTLVVML 216


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 371 PDGHHGESFPL 403
           P GHH  S PL
Sbjct: 516 PSGHHASSAPL 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,144
Number of Sequences: 438
Number of extensions: 1947
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)