Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L18
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   2.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   3.7  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   6.4  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.4  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 137 ASAHFIITESVIDDAIYSQLDAESRLAHRRQHGPYPHTI 21
           A++HF    SV D + +     E+ L     H PYP  +
Sbjct: 8   AASHFHARSSVNDSSFHLSRQEEAELLEGALHAPYPEEL 46


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/36 (25%), Positives = 24/36 (66%)
 Frame = +3

Query: 99  VYNGFGDNKVSARNSAAEQALRDLVINKMSKLANGD 206
           +Y+G G+NK  +++  + + L+++ +++  + A GD
Sbjct: 435 IYSGSGNNKSDSQSHISGRTLKEISLDEPIRYAMGD 470


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 314 EQLV*RERRQLDHRYRLAVAGSVRIHARITFP 219
           EQL  R RR+  +R R+ +A     H++ITFP
Sbjct: 439 EQL--RRRRETLNRKRITIAKLQNNHSQITFP 468


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +3

Query: 3   TRDALANCMRVRPMLSPVRQAALCVELTIDGVVYNGFGDNKVSARNSAAEQALRDLVINK 182
           ++ ++  C+   P   P +       LT+DG +     DN+ S + +A    +R L+  +
Sbjct: 204 SKKSILTCLHYFPR-DPSQPFRSQASLTLDGKLIAVLLDNEYSTKGAAQVDGIRYLLPEQ 262

Query: 183 MSKLANG 203
           + ++ +G
Sbjct: 263 IHRILSG 269


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 116 TESVIDDAIYSQLDAESRLAHRRQ 45
           ++S ++DA++SQLD     A+R Q
Sbjct: 91  SDSELEDALFSQLDEFDDTAYREQ 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,014
Number of Sequences: 5004
Number of extensions: 15882
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)