Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L18
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0559 + 18516732-18516746,18516893-18517330                       29   2.1  
06_01_0742 + 5533370-5533396,5533512-5533646,5533739-5533993           28   3.7  
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    27   6.4  

>09_04_0559 + 18516732-18516746,18516893-18517330
          Length = 150

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/67 (29%), Positives = 22/67 (32%)
 Frame = +2

Query: 293 VRAIQAVRAVGERGTQRAAPAPPXXXXXXXXXXXXXXXXXXXXXXLAVAEPQAQEGKEAE 472
           V A  A  A      +   PA P                       A AEP A+E KEAE
Sbjct: 19  VEATPAAAAAEVEAPKEETPAAPAEAVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAE 78

Query: 473 VVAAERE 493
              AE E
Sbjct: 79  PEPAEPE 85


>06_01_0742 + 5533370-5533396,5533512-5533646,5533739-5533993
          Length = 138

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 81  LTIDGVVYNGFGDNKVSARNSAAEQALRD 167
           LTIDG+V   F +   + R  AAEQALRD
Sbjct: 53  LTIDGLVKESFME---ALRKDAAEQALRD 78


>08_02_0520 -
           18121561-18121821,18122216-18122470,18122560-18122731,
           18122824-18123105,18123159-18123292,18123425-18123508,
           18123611-18123901,18123982-18124314,18124620-18124750,
           18124826-18124930,18125011-18125167,18125248-18125351,
           18125442-18125602,18125800-18126116,18126369-18126650,
           18127011-18127312,18127609-18127699,18127771-18127824,
           18128110-18128186,18128279-18128438,18128545-18128629,
           18129059-18129367,18129514-18129890
          Length = 1507

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  ELTIDG-VVYNGFGDNKVSARNSAAEQALRDLVINKMS 188
           +L + G V YNG+G ++  A+ SAA  +  DL I +M+
Sbjct: 255 DLKVSGKVTYNGYGMDEFVAQRSAAYISQHDLHIPEMT 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,010,499
Number of Sequences: 37544
Number of extensions: 139131
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)