Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L18
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    34   7e-04
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 34.3 bits (75), Expect = 7e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 30  RVRPMLSPVRQAALCVELTIDGVVYNGFGDNKVSARNSAAEQALRDLV 173
           +V     P       + + IDG  Y G G  K  A+++AAE ALR++V
Sbjct: 51  KVVDQTGPTHAPIFTIAVQIDGQTYEGKGRTKKMAKHAAAELALRNIV 98


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 296 ERRQLDHRYRLAVAGSVRIHARITFP 219
           E R+ +  + + VA ++ + ARITFP
Sbjct: 446 ELRKKEPPHPIRVAKTIDVIARITFP 471


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 296 ERRQLDHRYRLAVAGSVRIHARITFP 219
           E R+ +  + + VA ++ + ARITFP
Sbjct: 432 ELRKKEPPHPIRVAKTIDVIARITFP 457


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 296 ERRQLDHRYRLAVAGSVRIHARITFP 219
           E R+ +  + + VA ++ + ARITFP
Sbjct: 466 ELRKKEPPHPIRVAKTIDVIARITFP 491


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 296 ERRQLDHRYRLAVAGSVRIHARITFP 219
           E R+ +  + + VA ++ + ARITFP
Sbjct: 415 ELRKKEPPHPIRVAKTIDVIARITFP 440


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 168 LVINKMSKLANGDV 209
           +V NK  K+ANGD+
Sbjct: 375 IVSNKYQKIANGDL 388


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 GDNKVSARNSAAEQALRDLVINKMSKLANG 203
           GD+K +    AA+   + +V+N   +++NG
Sbjct: 327 GDSKNNPPKGAADFTAQVIVLNHPGQISNG 356


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 114 GDNKVSARNSAAEQALRDLVINKMSKLANG 203
           GD+K      AA+   + +V+N   +++NG
Sbjct: 327 GDSKNQPPRGAADFTAQVIVLNHPGQISNG 356


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 114 GDNKVSARNSAAEQALRDLVINKMSKLANG 203
           GD+K      AA+   + +V+N   +++NG
Sbjct: 38  GDSKNQPPRGAADFTAQVIVLNHPGQISNG 67


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 306 KLFEQWES 329
           KLFEQW+S
Sbjct: 444 KLFEQWKS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,730
Number of Sequences: 438
Number of extensions: 1169
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)