Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L16
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa...    27   2.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   2.8  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   2.8  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   6.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   8.5  

>SPBC1711.14 |rec15||meiotic recombination protein
           Rec15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 288 TYSISAHPLITRRLLLAAKPGQQHAK 211
           +YS+SA  L +R+L + A+  QQH K
Sbjct: 2   SYSVSAAQLWSRKLAMQAEDMQQHQK 27


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 228 GQQHAKQYNIHTLWKPYHISNLRSPSLYESQ 136
           G+QH    ++HT + P   S + S SL  SQ
Sbjct: 169 GKQHLSSLSLHTHFNPSSSSTVSSDSLESSQ 199


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 299 EQAKQTALDKHYYIPGSSVLI--DVEVHYNKVGKNKSRIFTTIPR 427
           ++ K+T  D    I    ++   DV+V  N++ K KS    T+P+
Sbjct: 607 DRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPK 651


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 275 DIEYVFPSEQAKQTALDKHYYIPGSSVLIDVEVHY 379
           DIE V P E+A Q +  K  YI   S ++  +V +
Sbjct: 9   DIESVLPEEKAPQVSEAKKDYISQESTVLSGQVDF 43


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 216 AKQYNIHTLWKPYHISNLRSPSLYESQTNKRT 121
           AKQ N+ + W  + I+NL+S   Y   T + T
Sbjct: 294 AKQMNVESDWPAFVIANLKSMLKYPFPTTELT 325


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 484 DYSSLVIYSPQRHRPSFTKSRYCREYSRFILAY--FIIMY 371
           D  SLV  +P  +   F   R C +Y   +L Y  FII Y
Sbjct: 30  DTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYY 69


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +1

Query: 58   ILNNHKHDKLYGFEVITILEVSPFVRLRLV*AWRS*VRNVVRFPESMYVVLFSVLLA 228
            I+   +HD++     I   +++  VR   +  W++ V N  R    +   L S++++
Sbjct: 1857 IIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVS 1913


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 291 KTYSISAHPLITRRLLLAAKPGQQHAKQYNIHTLWKPYHISN 166
           K  SIS + L      +A  P  +  K  N H ++ P HI+N
Sbjct: 124 KVLSISKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIAN 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,175
Number of Sequences: 5004
Number of extensions: 44427
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)