Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L16
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate o...    27   7.7  

>AF026211-7|AAB71292.1|  306|Caenorhabditis elegans Hypothetical
           protein T13B5.7 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +2

Query: 116 KSVRLFV*DSYKLGDLKLEMWYGFQRVCM-----LYCLACCWPGLAAKSNLRVIRGWADI 280
           KSVR FV D    G +  +  Y  +R C+     L C +     + AK     +     +
Sbjct: 201 KSVRAFVSDKGINGGIPCDPKYDTRRTCLNMDIGLNCASKFMKDINAKGKREAVHSIHSL 260

Query: 281 EYVFPSEQAKQTALDKHYYIPGSSVLIDVEVHYNKVGKNKSRI 409
             + P        LD  Y IP S V       YN + +N  R+
Sbjct: 261 AQLRPWANKMNCGLDV-YLIPDSKVF---RYDYNGIEENVHRV 299


>Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical
           protein C47A10.5 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 341 PGSSVLIDVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGR 478
           P   V++DVE H++K    K  I  TIP+ +    V +G++  + R
Sbjct: 197 PIRGVVLDVEAHWHKHFNYKDFITFTIPKENS---VVIGSVKQENR 239


>AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 341 PGSSVLIDVEVHYNKVGKNKSRIFTTIPRFSEGRPVTLGTIDNQGR 478
           P   V++DVE H++K    K  I  TIP+ +    V +G++  + R
Sbjct: 197 PIRGVVLDVEAHWHKHFNYKDFITFTIPKENS---VVIGSVKQENR 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,824
Number of Sequences: 27780
Number of extensions: 233944
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)