Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_L15
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.6  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    26   4.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   4.6  

>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 450 IYLSPVETHCSNVDYFIPDENNETKG-LSDDAMNRLHMAR 566
           ++L+ +E  C NV   I  E+N+  G L+++ +   +MAR
Sbjct: 83  VFLTLIEFPCRNVYAKISTEDNQPDGCLAEENLKHFYMAR 122


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 359  QYSLGVARRIVRCAFLYNTPFYFNIKPIVCRKCYGHQSSSNDCCNGRY 216
            Q SL   ++ +R + L+N  F +N+ P V ++C    S S++  +  Y
Sbjct: 3642 QTSLREIKKWLRRSELFNVLFTYNLHPSVIKQCEFPWSFSSESTDTGY 3689


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 188 NALFCSNFIYSDHYSNRCCCFD 253
           N L C  F Y  +  NR  CFD
Sbjct: 10  NGLKCPQFAYGSYMVNRTKCFD 31


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 357 LESLNSKYYYYTR--TRGLFRICYPKERPPTVEIYLSPVETHCSNVDY 494
           L S N  YY+  +  +  L  + + K+R PT   +   V+  C + DY
Sbjct: 248 LVSFNMDYYWSLKHNSEKLNTLIFDKDREPTTLTFRERVDYSCLDEDY 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,245
Number of Sequences: 5004
Number of extensions: 41419
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)